PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g08850

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

FAR1

Protein Properties

Length: 669aa MW: 76793.2 Da PI: 7.5712

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g08850	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.6	5.6e-20	55	148	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + t+r fvC + g++ ++ ++ k +r+r ++r+gC+a l+++k + + +w+vt + ++HnH+l Tp1g08850 55 DFYSTFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTLSEGKPQRNRRSSRCGCQAYLRISKITelgSMEWRVTGFANHHNHDLL 148 6************9998877356667999*********999999*****************9989999***********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-16	55	148	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.2E-20	271	360	IPR018289	MULE transposase domain
Pfam	PF04434	1.8E-8	546	580	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.742	549	582	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.2E-7	557	584	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MLLIYDDPSD HRSLSLDDAS STEESPDGTN LSLEAVHDAI PYIGQRFLTH DAAYDFYSTF 60 AKRCGFSIRR HRTEGKDGVG KGLTRRYFVC HRAGNTPVKT LSEGKPQRNR RSSRCGCQAY 120 LRISKITELG SMEWRVTGFA NHHNHDLLEP NQVRFLPAYR SISDADKSRI LMFSKTGITV 180 QQMMRLMELE KCVEPGFLPF TEKDVRNLLQ SFKKLDPEDE NIDFLRMCQS IKEQDPNFKF 240 EFTLDANDKL ENIAWSYASS IQSYEIFGDA VVFDTTHRLS AVEMPLGIWV GVNNYGVPCF 300 FGCVLLRDEN LRSWSWALQA FVGFMNGKAP QTILTDHNMC LKEAIDGEMP TTKHALCIWM 360 LVGKFPSWFN GCLGERYNDW KAEFYRLYHL ESIEEFELGW RDMVNSFGLH TNRHINNLYA 420 SRSLWSLPYL RSHFFAGMTL SGRSKAINAF IQRFLSAQTR LAHFVEQVAV AVDFKDQATE 480 QQTMQQNLQN ISLKTGAPME SHAASVLTPF AFSNLQEQLV LAAHYASFQM EDGYLVRHHT 540 KLDGGRKVYW VPQEGIISCS CQLFEFSGFL CRHALRVLST GNCFQVPDRY LPLRWRRIST 600 SYSKTFRSNA EDHGERVQFL QNLVSTLVSE SSKSKERLEI ATEQTSMLLS RIREQPISSL 660 ALRDISRNF

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MLLIYDDPSD HRSLSLDDAS STEESPDGTN LSLEAVHDAI PYIGQRFLTH DAAYDFYSTF  60
AKRCGFSIRR HRTEGKDGVG KGLTRRYFVC HRAGNTPVKT LSEGKPQRNR RSSRCGCQAY  120
LRISKITELG SMEWRVTGFA NHHNHDLLEP NQVRFLPAYR SISDADKSRI LMFSKTGITV  180
QQMMRLMELE KCVEPGFLPF TEKDVRNLLQ SFKKLDPEDE NIDFLRMCQS IKEQDPNFKF  240
EFTLDANDKL ENIAWSYASS IQSYEIFGDA VVFDTTHRLS AVEMPLGIWV GVNNYGVPCF  300
FGCVLLRDEN LRSWSWALQA FVGFMNGKAP QTILTDHNMC LKEAIDGEMP TTKHALCIWM  360
LVGKFPSWFN GCLGERYNDW KAEFYRLYHL ESIEEFELGW RDMVNSFGLH TNRHINNLYA  420
SRSLWSLPYL RSHFFAGMTL SGRSKAINAF IQRFLSAQTR LAHFVEQVAV AVDFKDQATE  480
QQTMQQNLQN ISLKTGAPME SHAASVLTPF AFSNLQEQLV LAAHYASFQM EDGYLVRHHT  540
KLDGGRKVYW VPQEGIISCS CQLFEFSGFL CRHALRVLST GNCFQVPDRY LPLRWRRIST  600
SYSKTFRSNA EDHGERVQFL QNLVSTLVSE SSKSKERLEI ATEQTSMLLS RIREQPISSL  660
ALRDISRNF

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g08850

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF424595	0.0	AF424595.1 Arabidopsis thaliana At1g10240/F14N23_12 mRNA, complete cds.
GenBank	BT000486	0.0	BT000486.1 Arabidopsis thaliana unknown protein (At1g10240/F14N23_12) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013585848.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Refseq	XP_013585849.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A0D3C900	0.0	A0A0D3C900_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6F1K9	0.0	A0A3P6F1K9_BRAOL; Uncharacterized protein
STRING	Bo5g010680.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]