PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g06250

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GRAS

Protein Properties

Length: 669aa MW: 76453.3 Da PI: 5.8503

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g06250	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	350	3.7e-107	291	667	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNq 100 ++lL+ cA+ +s+gd+ a+ lL ++++++sp gd+ qRla++f++AL+ rl +s+ ++ ++ + ++++++ ++ l+++k+f +sP++++ ++ N+ Tp1g06250 291 RTLLTLCAQSISTGDKVTADDLLRQIRKQCSPFGDASQRLAHFFANALEVRLEGSTGTMIQSYyDSITSNKRTAAQILKSYKAFLSASPFMTLIYFYSNE 390 6799************************************************7777776664777888888*********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +Il+a++ ++ +HiiDf+i +G+QWp ++q L++ + gp +lRiTg++ p++g +e++e tg+rL+++++++gvpfe+n++++k++e+++++e++++p Tp1g06250 391 MILDAAKDASVLHIIDFGILYGFQWPMFIQNLSKSKTGPRKLRITGIELPQNGfrPTERIEDTGRRLTEYCKRFGVPFEYNAIASKNWETIRMDEFKIRP 490 ************************************************9**************************99*********** PP GRAS 199 gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 +E+laVn vl+ ++l d + e+ +rd +Lkl+++++P+v+ + + + n++ F +rf eal +ysalfd++ ++l+re+ eri E e+ gre++nv Tp1g06250 491 NEVLAVNTVLRFKNLRDVTPGEEDcPRDGFLKLIRDMNPNVFLSSTINGSFNAPFFTTRFKEALFHYSALFDMFGSTLSRENPERIHFEGEFYGREVMNV 590 ************9999999889********************************************************************** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +aceg +r+er et+++W+ r+++aGFk+ p++ + +++ + ++k + + + ++e+s+++++gWk+r L+s S+W Tp1g06250 591 IACEGVARVERPETYKQWQVRMMRAGFKQKPVEAELVESFREKMKKWGyHKDFVLDEDSNWFLQGWKGRILFSSSCW 667 ******************************************999999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.13	264	647	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-104	291	667	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
METNFSGMVN GFEYYDMGFL PNPIPDLGFG VPSSSDFDLR TDHQPLIWVP ATQQDQDHHH 60 HQYSSPADEI DSKNTLLIYV NQLLMEESLA EKQSMLYDSL ALRQTEEMLQ QVISDSKAQS 120 FTIPNSISSS SVSGSAGGGS NKFRGFGQPA NEILVRSMFS DSESVMQYKR GLEEASKFLP 180 NTDQWIINLE HERKGVVSVK EEKGLFGISR ARKNHHEREE EEDLEETRSS KQSAVSVEDG 240 KLTELFDKVL LLDCQSDPQI IEDGENVSSK TQDNKKEGGR AKKKNQAVDF RTLLTLCAQS 300 ISTGDKVTAD DLLRQIRKQC SPFGDASQRL AHFFANALEV RLEGSTGTMI QSYYDSITSN 360 KRTAAQILKS YKAFLSASPF MTLIYFYSNE MILDAAKDAS VLHIIDFGIL YGFQWPMFIQ 420 NLSKSKTGPR KLRITGIELP QNGFRPTERI EDTGRRLTEY CKRFGVPFEY NAIASKNWET 480 IRMDEFKIRP NEVLAVNTVL RFKNLRDVTP GEEDCPRDGF LKLIRDMNPN VFLSSTINGS 540 FNAPFFTTRF KEALFHYSAL FDMFGSTLSR ENPERIHFEG EFYGREVMNV IACEGVARVE 600 RPETYKQWQV RMMRAGFKQK PVEAELVESF REKMKKWGYH KDFVLDEDSN WFLQGWKGRI 660 LFSSSCWVP

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

METNFSGMVN GFEYYDMGFL PNPIPDLGFG VPSSSDFDLR TDHQPLIWVP ATQQDQDHHH  60
HQYSSPADEI DSKNTLLIYV NQLLMEESLA EKQSMLYDSL ALRQTEEMLQ QVISDSKAQS  120
FTIPNSISSS SVSGSAGGGS NKFRGFGQPA NEILVRSMFS DSESVMQYKR GLEEASKFLP  180
NTDQWIINLE HERKGVVSVK EEKGLFGISR ARKNHHEREE EEDLEETRSS KQSAVSVEDG  240
KLTELFDKVL LLDCQSDPQI IEDGENVSSK TQDNKKEGGR AKKKNQAVDF RTLLTLCAQS  300
ISTGDKVTAD DLLRQIRKQC SPFGDASQRL AHFFANALEV RLEGSTGTMI QSYYDSITSN  360
KRTAAQILKS YKAFLSASPF MTLIYFYSNE MILDAAKDAS VLHIIDFGIL YGFQWPMFIQ  420
NLSKSKTGPR KLRITGIELP QNGFRPTERI EDTGRRLTEY CKRFGVPFEY NAIASKNWET  480
IRMDEFKIRP NEVLAVNTVL RFKNLRDVTP GEEDCPRDGF LKLIRDMNPN VFLSSTINGS  540
FNAPFFTTRF KEALFHYSAL FDMFGSTLSR ENPERIHFEG EFYGREVMNV IACEGVARVE  600
RPETYKQWQV RMMRAGFKQK PVEAELVESF REKMKKWGYH KDFVLDEDSN WFLQGWKGRI  660
LFSSSCWVP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	5e-44	290	667	5	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g06250

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006417797.1	0.0	scarecrow-like protein 31
Swissprot	Q3EDH0	0.0	SCL31_ARATH; Scarecrow-like protein 31
TrEMBL	V4KEH5	0.0	V4KEH5_EUTSA; Uncharacterized protein
STRING	XP_006417797.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13511	17	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	0.0	GRAS family protein