PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G07520.1
Common NameF22G5.41, SCL31
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 695aa    MW: 79251.4 Da    PI: 5.3233
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G07520.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS337.32.8e-1033166922373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshlta 98 
                  ++lL+ cA+ vs+gd+  a+ lL ++++++sp gd+ qRla++f++AL+arl +s+ ++ ++   + ++++++ ++ l+++++f  +sP++++ ++  
  AT1G07520.1 316 RTLLTLCAQSVSAGDKITADDLLRQIRKQCSPVGDASQRLAHFFANALEARLEGSTGTMIQSYyDSISSKKRTAAQILKSYSVFLSASPFMTLIYFFS 413
                  6799**************************************************777777766366666667799*********************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N++Il+a++ ++ +Hi+Df+i +G+QWp ++q L++ + g  +lRiTg++ p++g   +e+++ tg+rL+++++++gvpfe+n++++k++e++++ee+
  AT1G07520.1 414 NKMILDAAKDASVLHIVDFGILYGFQWPMFIQHLSKSNPGLRKLRITGIEIPQHGlrPTERIQDTGRRLTEYCKRFGVPFEYNAIASKNWETIKMEEF 511
                  ******************************************************9******************************99*********** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                  +++p+E+laVn vl+ ++l d     e+ +rd +Lkl+++++P+v+  +  + + n++ F +rf eal +ysalfd + a+l++e+ eri  E e+ g
  AT1G07520.1 512 KIRPNEVLAVNAVLRFKNLRDVIPGEEDcPRDGFLKLIRDMNPNVFLSSTVNGSFNAPFFTTRFKEALFHYSALFDLFGATLSKENPERIHFEGEFYG 609
                  *******************98877777789******************************************************************** PP

         GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                  re++nv+aceg +r+er et+++W+ r+ +aGFk+ p++ + ++  +  ++k +  + + ++e+s+++++gWk+r L+s S+W
  AT1G07520.1 610 REVMNVIACEGVDRVERPETYKQWQVRMIRAGFKQKPVEAELVQLFREKMKKWGyHKDFVLDEDSNWFLQGWKGRILFSSSCW 692
                  ***********************************************99999999999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.84289672IPR005202Transcription factor GRAS
PfamPF035149.7E-101316692IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020100anatomyhypocotyl
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MESNYSGVVN GYDVSFLPTS IPDLGFGVPS SSDFDLRMDQ YYHQPSIWVP DQDHHFSPPA  60
DEIDSENTLL KYVNQLLMEE SLAEKQSIFY DSLALRQTEE MLQQVISDSQ TQSSIPNNSI  120
TTSSSSNSGD YSNSSNSSVR IENEVLFDNK HLGDSGVVSF PGSNMLRGGE QFGQPANEIL  180
VRSMFSDAES VLQFKRGLEE ASKFLPNTDQ WIFNLEPEME RVVPVKVEEG WSAISKTRKN  240
HHEREEEEDD LEEARRRSKQ FAVNEEDGKL TEMFDKVLLL DGECDPQIIE DGENGSSKAL  300
VKKGRAKKKS RAVDFRTLLT LCAQSVSAGD KITADDLLRQ IRKQCSPVGD ASQRLAHFFA  360
NALEARLEGS TGTMIQSYYD SISSKKRTAA QILKSYSVFL SASPFMTLIY FFSNKMILDA  420
AKDASVLHIV DFGILYGFQW PMFIQHLSKS NPGLRKLRIT GIEIPQHGLR PTERIQDTGR  480
RLTEYCKRFG VPFEYNAIAS KNWETIKMEE FKIRPNEVLA VNAVLRFKNL RDVIPGEEDC  540
PRDGFLKLIR DMNPNVFLSS TVNGSFNAPF FTTRFKEALF HYSALFDLFG ATLSKENPER  600
IHFEGEFYGR EVMNVIACEG VDRVERPETY KQWQVRMIRA GFKQKPVEAE LVQLFREKMK  660
KWGYHKDFVL DEDSNWFLQG WKGRILFSSS CWVPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-423156925374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.639380.0flower| vegetative tissue
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425617830.0
Genevisible261063_at0.0
Expression AtlasAT1G07520-
AtGenExpressAT1G07520-
ATTED-IIAT1G07520-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G07520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G07520
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0224640.0AC022464.4 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001322139.10.0GRAS family transcription factor
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLA0A178W5Z60.0A0A178W5Z6_ARATH; GRAS family transcription factor
TrEMBLA0A384L9U80.0A0A384L9U8_ARATH; Uncharacterized protein
STRINGAT1G07520.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Representative plantOGRP26615129
Publications ? help Back to Top
  1. Bolle C
    The role of GRAS proteins in plant signal transduction and development.
    Planta, 2004. 218(5): p. 683-92
    [PMID:14760535]
  2. Castelli V, et al.
    Whole genome sequence comparisons and "full-length" cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation.
    Genome Res., 2004. 14(3): p. 406-13
    [PMID:14993207]
  3. Tian C,Wan P,Sun S,Li J,Chen M
    Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.
    Plant Mol. Biol., 2004. 54(4): p. 519-32
    [PMID:15316287]
  4. Gao MJ,Parkin I,Lydiate D,Hannoufa A
    An auxin-responsive SCARECROW-like transcriptional activator interacts with histone deacetylase.
    Plant Mol. Biol., 2004. 55(3): p. 417-31
    [PMID:15604690]
  5. Libault M,Wan J,Czechowski T,Udvardi M,Stacey G
    Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor.
    Mol. Plant Microbe Interact., 2007. 20(8): p. 900-11
    [PMID:17722694]
  6. Lee MH, et al.
    Large-scale analysis of the GRAS gene family in Arabidopsis thaliana.
    Plant Mol. Biol., 2008. 67(6): p. 659-70
    [PMID:18500650]
  7. Davi
    Transcriptional factor interaction: a central step in DELLA function.
    Curr. Opin. Genet. Dev., 2008. 18(4): p. 295-303
    [PMID:18590820]