PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g02030
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 306aa    MW: 32936.4 Da    PI: 6.6783
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g02030genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.5e-09159203554
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  Tp1g02030 159 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 203
                99***********************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14152213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-14156213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6159203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MASNNNPHEN LSDQAPSDDF FEHILGNFSA SSGSGLSGLS GGLSGVGPPP MLLQLGSGDE  60
GNHNHMGAIG GGGPLGFHNQ MFPLGLSLDQ GKGHGFLKPE GVCGSGKRFP DDVVDNRCSS  120
MRPVFHGQPM SQPAPPMPHQ QSSIRPRVRA RRGQATDPHS IAERLRRERI AERIRALQEL  180
VPTVNKTDRA AMIDEIVDYV KFLRLQVKVL SMSRLGGAGA VAPLVTEMPL SSLIEDETQA  240
VWEKWSNDGT ERQVAKLMEE NVGAAMQLLQ SKALCIMPIS LAMAIYHSQP PDTSSSIVKP  300
EMNPPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g02030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531530.0AK353153.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418274.10.0transcription factor bHLH7
SwissprotQ93Y001e-171BH007_ARATH; Transcription factor bHLH7
TrEMBLE4MXA60.0E4MXA6_EUTHA; mRNA, clone: RTFL01-21-H10
TrEMBLV4L2X20.0V4L2X2_EUTSA; Uncharacterized protein
STRINGXP_006418274.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03040.11e-166bHLH family protein