PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G03040.1 | ||||||||
Common Name | BHLH7, EN92, F10O3.14 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 302aa MW: 32704.2 Da PI: 6.6058 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 6.8e-09 | 155 | 199 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++ + v+Y+k L AT1G03040.1 155 HSIAERLRRERIAERIRSLQELVPTvN------KTDRAAMIDEIVDYVKFL 199 99***********************55......9**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.36E-14 | 148 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.694 | 150 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.9E-14 | 152 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-6 | 155 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-9 | 156 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MANNNNIPHD SISDPSPTDD FFEQILGLSN FSGSSGSGLS GIGGVGPPPM MLQLGSGNEG 60 NHNHMGAIGG GGPVGFHNQM FPLGLSLDQG KGHGFLKPDE TGKRFQDDVL DNRCSSMKPI 120 FHGQPMSQPA PPMPHQQSTI RPRVRARRGQ ATDPHSIAER LRRERIAERI RSLQELVPTV 180 NKTDRAAMID EIVDYVKFLR LQVKVLSMSR LGGAGAVAPL VTEMPLSSSV EDETQAVWEK 240 WSNDGTERQV AKLMEENVGA AMQLLQSKAL CIMPISLAMA IYHSQPPDTS SSIVKPEMNP 300 PP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 164 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.20497 | 0.0 | flower| leaf| silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30678458 | 0.0 | ||||
Genevisible | 263117_at | 0.0 | ||||
Expression Atlas | AT1G03040 | - | ||||
AtGenExpress | AT1G03040 | - | ||||
ATTED-II | AT1G03040 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G03040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G31050 | |||||
IntAct | Search Q93Y00 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G03040 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF251692 | 0.0 | AF251692.2 Arabidopsis thaliana putative transcription factor BHLH7 mRNA, complete cds. | |||
GenBank | AY054469 | 0.0 | AY054469.1 Arabidopsis thaliana Unknown protein (At1g03040; F10O3.14) mRNA, complete cds. | |||
GenBank | AY114633 | 0.0 | AY114633.1 Arabidopsis thaliana unknown protein (At1g03040) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_563672.1 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q93Y00 | 0.0 | BH007_ARATH; Transcription factor bHLH7 | ||||
TrEMBL | A0A178W559 | 0.0 | A0A178W559_ARATH; Uncharacterized protein | ||||
STRING | AT1G03040.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1611 | 28 | 88 | Representative plant | OGRP58 | 16 | 313 |
Link Out ? help Back to Top | |
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Phytozome | AT1G03040.1 |
Entrez Gene | 839446 |
iHOP | AT1G03040 |
wikigenes | AT1G03040 |