PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp1g01320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NAC | ||||||||
Protein Properties | Length: 394aa MW: 44246.6 Da PI: 8.8761 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.2 | 2.8e-35 | 5 | 140 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeek..ewyfFskrdkkyatgk...rknratksgyWkatgkdkevlsk. 95 +GfrF Ptdeelv++yL+ k+ g + +++++i++vdiy+++P +Lp++ + e++ wyfF +++++++++ r++r+tksg+Wk+tg + ++++k Tp1g01320 5 VGFRFLPTDEELVDHYLRLKILGGNtSKVDKAISTVDIYSFDPLELPSRSRRESTdlVWYFFGCKKNQHKHNGvveRQSRKTKSGFWKKTGATMDIVRKr 104 7*******************998884666677***************644443333599***777766664323459*********************98 PP NAM 96 .kgelvglkktLvfy...kgrapkgektdWvmheyr 127 ++e++g k+++vf k + +k+dWvmhey Tp1g01320 105 gNSEKIGEKRVFVFQynsKILGGSNSKSDWVMHEYV 140 88888*********8443223445579********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 40.158 | 3 | 160 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.66E-37 | 4 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-22 | 5 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MVTSVGFRFL PTDEELVDHY LRLKILGGNT SKVDKAISTV DIYSFDPLEL PSRSRRESTD 60 LVWYFFGCKK NQHKHNGVVE RQSRKTKSGF WKKTGATMDI VRKRGNSEKI GEKRVFVFQY 120 NSKILGGSNS KSDWVMHEYV ATQLSPNQMV TYTICKVTFK GEEKDLPSSS SPVGGANEHN 180 QTLIMNNLGG SEGSLFDCLQ SQELPNSRQF SGFLDVEKET QIGVAIRRAI DNASTDDWNR 240 FINNDDDEEL FTQEDRSDYR PKMSLTGVFI AHSDDDSDSN LISATTSSLQ TSSTCDSFGS 300 SNRRIDQVTD LQKSPSSTTK LVSLTQVVNK TLGISIDTSE KKKKSPYDDN AQGSEIGRDQ 360 IGKEMIKNKR AGFIHKMIQR FAKKIKLCSS ISRT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-19 | 6 | 139 | 18 | 138 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp1g01320 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018492222.1 | 1e-144 | PREDICTED: NAC domain-containing protein 5-like | ||||
Swissprot | O81914 | 1e-123 | NAC5_ARATH; NAC domain-containing protein 5 | ||||
TrEMBL | M4EWW8 | 1e-137 | M4EWW8_BRARP; Uncharacterized protein | ||||
STRING | Bra033303.1-P | 1e-138 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02250.1 | 1e-116 | NAC domain containing protein 5 |
Publications ? help Back to Top | |||
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