PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G02250.1 | ||||||||
Common Name | anac005, NAC005, T7I23.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 362aa MW: 40801.6 Da PI: 7.724 | ||||||||
Description | NAC domain containing protein 5 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 130.6 | 1.2e-40 | 4 | 132 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 p+GfrF+Ptd e+v+ yL++k +++ +++evi++vdi++++PwdLp +++k++++ wyfF ++++ky +g+r+ r+tksg+Wk+tg + ++++k AT1G02250.1 4 PVGFRFRPTDGEIVDIYLRPKNLESNtSHVDEVISTVDICSFDPWDLPshSRMKTRDQVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKt 101 89*****************99665553788889**************96448999999**************************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++g k++Lvf ++ g+k+dW mhey++ AT1G02250.1 102 gDREKIGEKRVLVFK---NHGGSKSDWAMHEYHA 132 88889*********7...78899*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-44 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.642 | 3 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.4E-22 | 4 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0005352 | anatomy | xylem |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MANPVGFRFR PTDGEIVDIY LRPKNLESNT SHVDEVISTV DICSFDPWDL PSHSRMKTRD 60 QVWYFFGRKE NKYGKGDRQI RKTKSGFWKK TGVTMDIMRK TGDREKIGEK RVLVFKNHGG 120 SKSDWAMHEY HATFSSPNQI MTYTLCKVKF KGERREFSVA TGSGIKHTHS LIPPTNNSGV 180 LSVETEGSLF HSQESQNPSQ FSGFLDVDAL DRDFCNILSD DFKGFFNDDD EQSKIVSMQD 240 DRNNHTPQKP LTGVFSDHST DGSDSDPISA TTISIQTLST CPSFGSSNPL YQITDLQESP 300 NSIKLVSLAQ EVSKTPGTGI DNDAQGTEIG EHKLGQETIK NKRAGFFHRM IQKFVKKIHL 360 RT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-20 | 4 | 131 | 16 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 334182235 | 0.0 | ||||
Genevisible | 264149_at | 0.0 | ||||
Expression Atlas | AT1G02250 | - | ||||
AtGenExpress | AT1G02250 | - | ||||
ATTED-II | AT1G02250 | - |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00123 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G02250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G02250 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493425 | 0.0 | AB493425.1 Arabidopsis thaliana At1g02250 mRNA for hypothetical protein, partial cds, clone: RAAt1g02250. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_171727.2 | 0.0 | NAC domain containing protein 5 | ||||
Swissprot | O81914 | 0.0 | NAC5_ARATH; NAC domain-containing protein 5 | ||||
TrEMBL | A0A178W508 | 0.0 | A0A178W508_ARATH; NAC005 | ||||
STRING | AT1G02250.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2315 | 16 | 76 |
Link Out ? help Back to Top | |
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Phytozome | AT1G02250.1 |
Entrez Gene | 839390 |
iHOP | AT1G02250 |
wikigenes | AT1G02250 |