PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp1g01310

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

NAC

Protein Properties

Length: 374aa MW: 42479.6 Da PI: 6.7892

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp1g01310	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.8	5.6e-42	8	140	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 p+Gf+F+Ptdeelv++yL+ k g + ++++vi++v+i++++PwdLp+ ++ ++ wyfF ++++ky++g+r++r+tk+g+Wk+tg + ++++k Tp1g01310 8 PVGFEFRPTDEELVDYYLRLKNLGADtSHVDQVINTVNICSFDPWDLPSksrIMRPIDQVWYFFGPKENKYNKGDRQSRKTKTGFWKKTGVTLDITRKrg 107 89***************99888874666778**********9524434446789*********************************977 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++g kk+Lvf+ + p+g+k++Wvmhey++ Tp1g01310 108 TREKIGEKKVLVFHLTKIPNGSKSTWVMHEYHA 140 7788*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.68E-44	4	159	IPR003441	NAC domain
PROSITE profile	PS51005	44.659	7	159	IPR003441	NAC domain
Pfam	PF02365	1.2E-23	8	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MWKQLSNPVG FEFRPTDEEL VDYYLRLKNL GADTSHVDQV INTVNICSFD PWDLPSKSRI 60 MRPIDQVWYF FGPKENKYNK GDRQSRKTKT GFWKKTGVTL DITRKRGTRE KIGEKKVLVF 120 HLTKIPNGSK STWVMHEYHA TFLPPNQMIT YTVCKVEFKG EERDISSSSG SEIEISRSLI 180 PPMNNNSGGS GGSSFECLTS QELQISPQFS GPLDMDALDM TFKNLLEDDW KSLYDDDDDD 240 EQRMIVSMQE DRNDYRPKKS LTGVFIGHGS DDSDSDSDST SATTSFFQTS STCGSFGSSN 300 RRIDKITDLQ KSPNSTTQLV PLAQKVSQAL AQGTEIGEHN LGQEIITKKR NSFFYRIIQR 360 FVKKLDLCSP ISRT

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MWKQLSNPVG FEFRPTDEEL VDYYLRLKNL GADTSHVDQV INTVNICSFD PWDLPSKSRI  60
MRPIDQVWYF FGPKENKYNK GDRQSRKTKT GFWKKTGVTL DITRKRGTRE KIGEKKVLVF  120
HLTKIPNGSK STWVMHEYHA TFLPPNQMIT YTVCKVEFKG EERDISSSSG SEIEISRSLI  180
PPMNNNSGGS GGSSFECLTS QELQISPQFS GPLDMDALDM TFKNLLEDDW KSLYDDDDDD  240
EQRMIVSMQE DRNDYRPKKS LTGVFIGHGS DDSDSDSDST SATTSFFQTS STCGSFGSSN  300
RRIDKITDLQ KSPNSTTQLV PLAQKVSQAL AQGTEIGEHN LGQEIITKKR NSFFYRIIQR  360
FVKKLDLCSP ISRT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-29	4	139	17	144	NAC domain-containing protein 19
3swm_B	2e-29	4	139	17	144	NAC domain-containing protein 19
3swm_C	2e-29	4	139	17	144	NAC domain-containing protein 19
3swm_D	2e-29	4	139	17	144	NAC domain-containing protein 19
3swp_A	2e-29	4	139	17	144	NAC domain-containing protein 19
3swp_B	2e-29	4	139	17	144	NAC domain-containing protein 19
3swp_C	2e-29	4	139	17	144	NAC domain-containing protein 19
3swp_D	2e-29	4	139	17	144	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00123	DAP	Transfer from AT1G02250	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp1g01310

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_171727.2	1e-148	NAC domain containing protein 5
Swissprot	O81914	1e-149	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	A0A178W508	1e-147	A0A178W508_ARATH; NAC005
STRING	AT1G02250.1	1e-148	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	1e-122	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]