PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g01020
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 590aa    MW: 65703 Da    PI: 7.0914
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g01020genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-13433478454
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  Av YI++L
  Tp1g01020 433 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAVSYINEL 478
                799***********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.9E-5048236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.326429478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-19432499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.21E-14432483No hitNo description
PfamPF000102.0E-10433478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-18433492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-16435484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MNIGGVVWNE DDKAIVASLL GKRAIDYLLS SSVPNANLLM TVGSDENLQN KLSDLVERPN  60
ASNFSWNYAI FWQISRSKAG DLVLCWGDGS CREPKEGEKS EIVRILSMGR EEETHQTMRK  120
RVLQKLHALF GGLEEDNCAL RLDRVTDTEM FLLASMYFSF PRGEGGPGMC FDSGKPVWLP  180
DVVNSGSDYC VRSFLAKSAG IQTIVLVPTD IGVVELGSTR CLPESEESML SIRSSFSSNL  240
PPPVRVVTTA ALPVVVADKS DDNRTVTSSK IFGKDLHNSG FLRHHQTQQP QQHRQFREKL  300
TVRKMDDKVP KRVDAYPNNG NRYMFSNPST NNNTLLSPTW VQPEMYRRTN TVKEVPSTED  360
FKFLPLQQSS QRLPPPAQMQ IDFSGASSRA SENNSDGEGG AEWADVVGGD ESGNNRPRKR  420
GRRPANGRAE ALNHVEAERQ RREKLNQRFY ALRSVVPNIS KMDKASLLGD AVSYINELHA  480
KLKVMEAERE RLGYSSNPPI SLEPEVSVQT AGEDVTVRVN CPLGSHPASR IFHAFEESKV  540
EVISSQLEVP QDIVLHTFVI KSEELTKEKL ISAFSREQSS SVQSRTSSGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-26427512280Transcription factor MYC2
5gnj_B2e-26427512280Transcription factor MYC2
5gnj_E2e-26427512280Transcription factor MYC2
5gnj_F2e-26427512280Transcription factor MYC2
5gnj_G2e-26427512280Transcription factor MYC2
5gnj_I2e-26427512280Transcription factor MYC2
5gnj_M2e-26427512280Transcription factor MYC2
5gnj_N2e-26427512280Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g01020
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533310.0AK353331.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-P08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418406.10.0transcription factor bHLH13
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLE4MXT40.0E4MXT4_EUTHA; mRNA, clone: RTFL01-24-P08
TrEMBLV4KZG70.0V4KZG7_EUTSA; Uncharacterized protein
STRINGXP_006418406.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  2. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]