PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g00940
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 441aa    MW: 50211.6 Da    PI: 8.3723
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g00940genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.77.3e-12299324126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                y   +C+++ +tG+C yGd+CkF H+
  Tp1g00940 299 YQPDICKDYKETGYCGYGDSCKFLHD 324
                66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.22E-9297330IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-8298325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009298326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-13299329IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9299324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.9E-13364417IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578504.35E-13375418No hitNo description
PfamPF139201.9E-8375417No hitNo description
PROSITE profilePS5008910.63376414IPR001841Zinc finger, RING-type
SMARTSM001849.2E-5376413IPR001841Zinc finger, RING-type
CDDcd001622.26E-8376417No hitNo description
PROSITE patternPS005180391400IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MSITCICVLS LENLRKYPQK RGKMEIYKIQ EMKTWSKFFV TAPLSHFTLI FSVSDRKTAN  60
GVVVLLPDAV HRRRFPRVVQ ATLRRKLQVC DCVFTESYIT MSDSGEPKTS QQEESQPSVK  120
ESQSQQVCTF FKKPSKAKNI RKRTADADEE DGDSKSESSI LNNLKRVAKP ESKLFFSSGP  180
SKSSATTSEA PEKPVFHYDS SKEIQVQNDS RATATLETET DFNQDARAIR ERVLKRADEA  240
LKGNKNKASD EKLYTGIHGY TDHKAGFRRE QTISSEKAGG SHGPLRASAH IRVSARFDYQ  300
PDICKDYKET GYCGYGDSCK FLHDRGDYKP GWQIEKEWEE AEKVRKRNKA MGIEDEDDDD  360
ADNNSDEDED ALPFACFICR EPFVDPVVTK CKHYFCEHCA LKHHTKNKKC FVCNQPTMGI  420
FNAAHEIKKR MAEERSKAKG L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M6e-6412644013326RING finger protein 113A
5z58_M6e-6412644013326RING finger protein 113A
6ff4_t6e-6412644013326RING finger protein 113A
6ff7_t6e-6412644013326RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g00940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1183760.0AK118376.1 Arabidopsis thaliana At1g01350 mRNA for unknown protein, complete cds, clone: RAFL19-64-B20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305264.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_023645143.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX840.0C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLR0GQF70.0R0GQF7_9BRAS; Uncharacterized protein
STRINGXP_006305264.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.10.0C3H family protein