PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g00020
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 353aa    MW: 39589.1 Da    PI: 7.7189
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g00020genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.8e-06326226
               -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
               k+ lC+ f+  G C  Gd+C F+H+
  Tp1g00020  3 KRILCK-FFVHGACLKGDNCEFSHD 26
               889***.7777*************5 PP
2zf-CCCH25.91.8e-083454526
               --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
               +C ++ r G+C+yG+rC++ H+
  Tp1g00020 34 ICTYYKR-GICSYGSRCRYEHV 54
               7998888.***********997 PP
3zf-CCCH18.63.3e-06135157326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 ++C+ +a+ G C++G+ C+ +Hg
  Tp1g00020 135 KPICS-YAAAGDCPRGNECPHIHG 157
                68999.*************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.981128IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-8326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5772956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-53153IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-43155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-43453IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-63454IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.399132159IPR000571Zinc finger, CCCH-type
SMARTSM003560.024133158IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.94E-13190265No hitNo description
Gene3DG3DSA:3.30.40.101.0E-9196261IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001626.38E-4200260No hitNo description
PROSITE profilePS5008912.342201259IPR001841Zinc finger, RING-type
SMARTSM001845.5E-7201258IPR001841Zinc finger, RING-type
PfamPF000973.9E-7201258IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180225234IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.103288317IPR000571Zinc finger, CCCH-type
SMARTSM003560.54288316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSKRILCKFF VHGACLKGDN CEFSHDWKDP TSNICTYYKR GICSYGSRCR YEHVKASRPH  60
PSASSSSLSG VPRSSPASVS NPLACAFVPG VPERADLSPA PSSCLKPAWN LGSFHQDSLD  120
EVNFFNPGTA KPEDKPICSY AAAGDCPRGN ECPHIHGNVC PTCGKRCLHP FRPQEREEHK  180
KVCEKKQKQV EALKLSQEIE CCVCLERVLS KPTPAERKFG LLTECDHAFC IACIRNWRSS  240
SPSTGMDVNS TLRACPICRK LSYFVVPSVI WFSAPEEKKE IMENYREKLR SIDCKHFNFG  300
DGNCPFGTSC FYKHAFHDGR LEEVVLRHLD AEDGETVIAK DIRLSDFLED MHI
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp1g00020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ9035760.0GQ903576.1 Arabidopsis thaliana ecotype Wassilewskija chloroplast luminal 19 kDa protein (At3g63540) gene, complete cds; and CCCH-type zinc finger protein C3H69 (At3g63550) gene, complete cds, alternatively spliced; nuclear genes for chloroplast products.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876728.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X2
SwissprotE0X9N40.0C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A1J3CUI60.0A0A1J3CUI6_NOCCA; Zinc finger CCCH domain-containing protein 69
STRINGscaffold_503646.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-148C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]