PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010559161.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 669aa MW: 72981.5 Da PI: 6.7103 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.7e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W +I ++g ++t+ q++s+ qk+ XP_010559161.1 24 RERWTEEEHDRFLEALKLYGRA-WQKIEDHVG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.64E-17 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.362 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.0E-17 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.3E-13 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-9 | 24 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.01E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence Send to blast |
METNSSGEEL VIKMRKPYTI TKQRERWTEE EHDRFLEALK LYGRAWQKIE DHVGTKTAVQ 60 IRSHAQKFFS KVEKEAKAKG VPVGIALNID IPPPRPKKKP SNPYPRKTGN RTPTSQAAAQ 120 YPSEELLPSN LEDDHSASSM NKSSVETMAF ANGCSFTEFL PPRKEANQDN GTRKASNSEK 180 DCCDLHAKSV QGSAKKYVSG ISHVDEEQGP QTYTRHVPVH TIDGSSVASP ISPFPTVSEG 240 IHVCLNKFTD MSACANRSKH DNDGPRYKSR ALPAVHLASA PIPHTLDDYW SFANLFVSNP 300 LQNPAAHAAS TFAASVWPGG TSTCAEIGVP PSQVSSPSSL AAIAAATVSA ATAWWAAHGL 360 LPLCAPIHSA FPCHPPPTTL APISDDNGHA PYANVDTKES TLQNPSVQSQ DADPEHSEAS 420 KAQSSPLKTT LSPSYSEQSG STKTETGGKP ASHEQTEAET DQNRAKNRKQ VDRSSCGSNT 480 PSSSDAEVDA SEKLEKDKDE EKEVEVDVNP PAEESNIRRS RSSSNLSDPW KSVSDEVLGQ 540 GRLAFQALFS REVLPQSFPP RRDSKDKKDL RGNEDGEKKK SAETEHGEGQ ELDLNRTAQA 600 TDSDHQEEKG DQDGYLAIGL GASKLKERTG FKPYKRCSVD AKENRITNSS TLNRVEQKDP 660 KRICLERRA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the circadian clock and in the phytochrome regulation. Binds to the promoter regions of APRR1/TOC1 and TCP21/CHE to repress their transcription. Binds to the promoter regions of CAB2A and CAB2B to promote their transcription. Represses both LHY and itself. {ECO:0000269|PubMed:11486091, ECO:0000269|PubMed:12007421, ECO:0000269|PubMed:12015970, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:19339503, ECO:0000269|PubMed:9657153}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010559161.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with peak levels occurring around 1 hour after dawn. Up-regulated by APRR1/TOC1 and transiently by light treatment. Down-regulated by APRR5, APRR7 and APRR9. The CCA1 mRNA is relatively stable in the dark and in far-red light but has a short half-life in red and blue light. {ECO:0000269|PubMed:17873091, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:19286557, ECO:0000269|PubMed:20233950, ECO:0000269|PubMed:9144958, ECO:0000269|PubMed:9657153}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019059793.1 | 0.0 | PREDICTED: protein CCA1-like isoform X4 | ||||
Swissprot | P92973 | 1e-154 | CCA1_ARATH; Protein CCA1 | ||||
TrEMBL | A0A076L4N2 | 1e-158 | A0A076L4N2_9ROSI; Late elongated hypocotyl a | ||||
TrEMBL | A0A0N7DST1 | 1e-159 | A0A0N7DST1_ARALP; CCA1 protein | ||||
STRING | XP_010559151.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46830.1 | 1e-131 | circadian clock associated 1 |