PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010559159.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 693aa MW: 75426.4 Da PI: 6.7922 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W +I ++g ++t+ q++s+ qk+ XP_010559159.1 24 RERWTEEEHDRFLEALKLYGRA-WQKIEDHVG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.86E-17 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.362 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.1E-17 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.3E-13 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-9 | 24 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.06E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 693 aa Download sequence Send to blast |
METNSSGEEL VIKMRKPYTI TKQRERWTEE EHDRFLEALK LYGRAWQKIE DHVGTKTAVQ 60 IRSHAQKFFS KVEKEAKAKG VPVGIALNID IPPPRPKKKP SNPYPRKTGN RTPTSQAAAQ 120 VGKQATSAST VLNCKEALLL QKGSLSEYPS EELLPSNLED DHSASSMNKS SVETMAFANG 180 CSFTEFLPPR KEDNGTRKAS NSEKDCCDLH AKSVQGSAKK YVSGISHVDE EQGPQTYTRH 240 VPVHTIDGSS VASPISPFPT VSEGIHVCLN KFTDMSACAN RSKHDNDGPR YKSRALPAVH 300 LASAPIPHTL DDYWSFANLF VSNPLQNPAA HAASTFAASV WPGGTSTCAE IGVPPSQVSS 360 PSSLAAIAAA TVSAATAWWA AHGLLPLCAP IHSAFPCHPP PTTLAPISDD NGHAPYANVD 420 TKESTLQNPS VQSQDADPEH SEASKAQSSP LKTTLSPSYS EQSGSTKTET GGKPASHEQT 480 EAETDQNRAK NRKQVDRSSC GSNTPSSSDA EVDASEKLEK DKDEEKEVEV DVNPPAEESN 540 IRRSRSSSNL SDPWKSVSDE VLGQGRLAFQ ALFSREVLPQ SFPPRRDSKD KKDLRGNEDG 600 EKKKSAETEH GEGQELDLNR TAQATDSDHQ EEKGDQDGYL AIGLGASKLK ERTGFKPYKR 660 CSVDAKENRI TNSSTLNRVE QKDPKRICLE RRA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the circadian clock and in the phytochrome regulation. Binds to the promoter regions of APRR1/TOC1 and TCP21/CHE to repress their transcription. Binds to the promoter regions of CAB2A and CAB2B to promote their transcription. Represses both LHY and itself. {ECO:0000269|PubMed:11486091, ECO:0000269|PubMed:12007421, ECO:0000269|PubMed:12015970, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:19339503, ECO:0000269|PubMed:9657153}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010559159.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with peak levels occurring around 1 hour after dawn. Up-regulated by APRR1/TOC1 and transiently by light treatment. Down-regulated by APRR5, APRR7 and APRR9. The CCA1 mRNA is relatively stable in the dark and in far-red light but has a short half-life in red and blue light. {ECO:0000269|PubMed:17873091, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:19286557, ECO:0000269|PubMed:20233950, ECO:0000269|PubMed:9144958, ECO:0000269|PubMed:9657153}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019059791.1 | 0.0 | PREDICTED: protein CCA1-like isoform X2 | ||||
Swissprot | P92973 | 1e-153 | CCA1_ARATH; Protein CCA1 | ||||
TrEMBL | A0A076L4N2 | 1e-170 | A0A076L4N2_9ROSI; Late elongated hypocotyl a | ||||
STRING | XP_010559151.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46830.1 | 1e-130 | circadian clock associated 1 |