PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010559158.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 696aa MW: 75739.7 Da PI: 6.7922 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.8e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W +I ++g ++t+ q++s+ qk+ XP_010559158.1 24 RERWTEEEHDRFLEALKLYGRA-WQKIEDHVG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.86E-17 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.362 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.1E-17 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.3E-13 | 23 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-9 | 24 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 696 aa Download sequence Send to blast |
METNSSGEEL VIKMRKPYTI TKQRERWTEE EHDRFLEALK LYGRAWQKIE DHVGTKTAVQ 60 IRSHAQKFFS KVEKEAKAKG VPVGIALNID IPPPRPKKKP SNPYPRKTGN RTPTSQAAAQ 120 VGKQATSAST VLNCKEALLL QKGSLSEYPS EELLPSNLED DHSASSMNKS SVETMAFANG 180 CSFTEFLPPR KEANQDNGTR KASNSEKDCC DLHAKSVQGS AKKYVSGISH VDEEQGPQTY 240 TRHVPVHTID GSSVASPISP FPTVSEGIHV CLNKFTDMSA CANRSKHDND GPRYKSRALP 300 AVHLASAPIP HTLDDYWSFA NLFVSNPLQN PAAHAASTFA ASVWPGGTST CAEIGVPPSQ 360 VSSPSSLAAI AAATVSAATA WWAAHGLLPL CAPIHSAFPC HPPPTTLAPI SDDNGHAPYA 420 NVDTKESTLQ NPSVQSQDAD PEHSEASKAQ SSPLKTTLSP SYSEQSGSTK TETGGKPASH 480 EQTEAETDQN RAKNRKQVDR SSCGSNTPSS SDAEVDASEK LEKDKDEEKE VEVDVNPPAE 540 ESNIRRSRSS SNLSDPWKSV SDEVLGQGRL AFQALFSREV LPQSFPPRRD SKDKKDLRGN 600 EDGEKKKSAE TEHGEGQELD LNRTAQATDS DHQEEKGDQD GYLAIGLGAS KLKERTGFKP 660 YKRCSVDAKE NRITNSSTLN RVEQKDPKRI CLERRA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the circadian clock and in the phytochrome regulation. Binds to the promoter regions of APRR1/TOC1 and TCP21/CHE to repress their transcription. Binds to the promoter regions of CAB2A and CAB2B to promote their transcription. Represses both LHY and itself. {ECO:0000269|PubMed:11486091, ECO:0000269|PubMed:12007421, ECO:0000269|PubMed:12015970, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:19339503, ECO:0000269|PubMed:9657153}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010559158.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with peak levels occurring around 1 hour after dawn. Up-regulated by APRR1/TOC1 and transiently by light treatment. Down-regulated by APRR5, APRR7 and APRR9. The CCA1 mRNA is relatively stable in the dark and in far-red light but has a short half-life in red and blue light. {ECO:0000269|PubMed:17873091, ECO:0000269|PubMed:19095940, ECO:0000269|PubMed:19218364, ECO:0000269|PubMed:19286557, ECO:0000269|PubMed:20233950, ECO:0000269|PubMed:9144958, ECO:0000269|PubMed:9657153}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019059784.1 | 0.0 | PREDICTED: protein CCA1-like isoform X1 | ||||
Refseq | XP_019059785.1 | 0.0 | PREDICTED: protein CCA1-like isoform X1 | ||||
Refseq | XP_019059786.1 | 0.0 | PREDICTED: protein CCA1-like isoform X1 | ||||
Refseq | XP_019059787.1 | 0.0 | PREDICTED: protein CCA1-like isoform X1 | ||||
Refseq | XP_019059788.1 | 0.0 | PREDICTED: protein CCA1-like isoform X1 | ||||
Refseq | XP_019059789.1 | 0.0 | PREDICTED: protein CCA1-like isoform X1 | ||||
Refseq | XP_019059790.1 | 0.0 | PREDICTED: protein CCA1-like isoform X1 | ||||
Swissprot | P92973 | 1e-156 | CCA1_ARATH; Protein CCA1 | ||||
TrEMBL | A0A076L4N2 | 1e-168 | A0A076L4N2_9ROSI; Late elongated hypocotyl a | ||||
STRING | XP_010559151.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46830.1 | 1e-133 | circadian clock associated 1 |