PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010559145.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 328aa MW: 37369.7 Da PI: 6.4407

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010559145.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165	2.6e-51	11	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPt+eel+++yL+kkv++ k++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky++g r+nrat++g+Wkatg+dk + XP_010559145.1 11 VPPGFRFHPTEEELLQYYLRKKVSSVKIDL-DVIRDVDLNKLEPWDIQEmcKIGTaPQNDWYFFSHKDKKYPSGMRTNRATTAGFWKATGRDKII 104 69**************************.9***********953433333556******************************99 PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s +g+ +g++ktLvfykgrap+g+++dW+mheyrl XP_010559145.1 105 HS-NGQRIGMRKTLVFYKGRAPHGQRSDWIMHEYRL 139 99.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-57	8	175	IPR003441	NAC domain
PROSITE profile	PS51005	55.516	11	175	IPR003441	NAC domain
Pfam	PF02365	1.5E-27	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MNISVNGQSQ VPPGFRFHPT EEELLQYYLR KKVSSVKIDL DVIRDVDLNK LEPWDIQEMC 60 KIGTAPQNDW YFFSHKDKKY PSGMRTNRAT TAGFWKATGR DKIIHSNGQR IGMRKTLVFY 120 KGRAPHGQRS DWIMHEYRLD DNISSDDTSV SFFVANITGE TSVEEGWVVC RTFKKKNLRK 180 TLTGGETTSS QMFNKETIER FPETMGRSGQ EELNIDPFRK HLTLESPSDA TSSYHDGPVN 240 SCHVRWEALD RFVASQLNGP TSYPTVDESH SDNDLALPTS FHGLNQLGLY QADLKQDFAP 300 DMELWNLAFG KTTSSLSDPL WHTSNGSE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-48	8	177	14	167	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-48	8	177	14	167	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-48	8	177	14	167	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-48	8	177	14	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-47	8	177	17	170	NAC domain-containing protein 19
3swm_B	1e-47	8	177	17	170	NAC domain-containing protein 19
3swm_C	1e-47	8	177	17	170	NAC domain-containing protein 19
3swm_D	1e-47	8	177	17	170	NAC domain-containing protein 19
3swp_A	1e-47	8	177	17	170	NAC domain-containing protein 19
3swp_B	1e-47	8	177	17	170	NAC domain-containing protein 19
3swp_C	1e-47	8	177	17	170	NAC domain-containing protein 19
3swp_D	1e-47	8	177	17	170	NAC domain-containing protein 19
4dul_A	9e-48	8	177	14	167	NAC domain-containing protein 19
4dul_B	9e-48	8	177	14	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269\|PubMed:16214898, ECO:0000269\|PubMed:17237351, ECO:0000269\|PubMed:17333250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010559145.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010559145.1	0.0	PREDICTED: NAC domain-containing protein 43-like
Swissprot	Q84WP6	1e-153	NAC43_ARATH; NAC domain-containing protein 43
TrEMBL	D7LF86	1e-153	D7LF86_ARALL; Uncharacterized protein
STRING	XP_010559145.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM778	28	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	1e-155	NAC family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gondolf VM, et al. A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis. BMC Plant Biol., 2014. 14: p. 344 [PMID:25492673] Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons. GM Crops Food, 2014. 5(4): p. 302-20 [PMID:25523176] Yuan Y,Teng Q,Zhong R,Ye ZH TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Plant Cell Physiol., 2016. 57(1): p. 35-45 [PMID:26556650] Yang C, et al. Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622] Pascual MB, et al. PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. Plant Biotechnol. J., 2018. 16(5): p. 1094-1104 [PMID:29055073] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]