PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010559123.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 592aa    MW: 65919.7 Da    PI: 5.7735
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010559123.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.9e-13419465455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er RR+++N++f  Lr+++P+ +      K++Ka+ L  A+ YI++Lq
  XP_010559123.1 419 NHVEAERMRREKLNQRFYALRSVVPNiS------KMDKASLLGDAIAYINELQ 465
                     799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.9E-5548236IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.75E-18414476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.825415464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.34E-14418469No hitNo description
Gene3DG3DSA:4.10.280.105.8E-18419476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10419465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-17421470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MNMGERGWDD EEKAMVSAVL GQRAFDYLRA SPVSNENLFA TMGSDESLQI KLSDLVDRPN  60
SMNFSWNYAI FWQLSQSRSG HLVLVWGDGC CREPNKEEES EAVGARNGGL EEDNWQNMRK  120
RVLQKLHRFS GGSDEDNYAL GLDRVTETEM FFLVSMYFSF PNGEGGPGRC FASGNHFWIS  180
DAMNTASDYC FRSFLAKSAG IRTIVMVPMD MGVVELGSVR SLPENMELVH SVRSLFSTRV  240
HQTATLFPYP MNERRDDDNN VEKNTGGVHK LFGQELGHSN SNHCHAFPPF RENMASRKMD  300
ERFPPQPWPE GYQSPRNGFH ALTPHAAQTT ALYAAQTTDS NMQGQVNATK EDAQLNNHQS  360
PKPTSQMQID YAASSKPSPN TVSRNLDSCL EKRAAAAMEE KRPRKRGRKP ANGREEPLNH  420
VEAERMRREK LNQRFYALRS VVPNISKMDK ASLLGDAIAY INELQEKVKV MEAERTGTGS  480
SPSPGEPNPS LESSNLIPDV EFQTLNDEVV VQVSSPLDTH PVSRIIQAVR NSQVSVLESK  540
LSLINDTVFH TFVIKSDGSE VLTKEKLMAA VCPEVGSEEP LPSSGSQVSG SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-28413475264Transcription factor MYC2
5gnj_B2e-28413475264Transcription factor MYC2
5gnj_E2e-28413475264Transcription factor MYC2
5gnj_F2e-28413475264Transcription factor MYC2
5gnj_G2e-28413475264Transcription factor MYC2
5gnj_I2e-28413475264Transcription factor MYC2
5gnj_M2e-28413475264Transcription factor MYC2
5gnj_N2e-28413475264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1400408KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010559123.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010559123.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like
SwissprotQ9ZPY80.0AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLV4N2990.0V4N299_EUTSA; Uncharacterized protein
STRINGXP_010559123.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.10.0ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]