PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010559054.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 297aa    MW: 32627.2 Da    PI: 5.9428
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010559054.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1084.9e-341973155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  XP_010559054.1 19 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 73
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4851676IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-321874IPR009057Homeodomain-like
SuperFamilySSF466897.17E-181873IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-251974IPR006447Myb domain, plants
PfamPF002491.1E-92172IPR001005SANT/Myb domain
PfamPF143791.3E-23104149IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEPINGGNNV NSNPSLASKQ RLRWTHELHE RFVDAVAQLG GPDRATPKGV LRVMGVQGLT  60
IYHVKSHLQK YRLAKYLPDS SSEGKRTDKK ESVDTLSGLD GSSQITEALK LQMEVQKRLH  120
EQLEVQRQLQ LRIEAQGKYL KKIIEEQQRV NGVLGETSAP GTSDNFPERD NNNDPSTPAP  180
TSESPIQDKS GKECGQEKSL SLDESLSSYR EPLTPDSGFD YGSTRESPRG EERSSKKPRV  240
SADMVMVPPI LESGLNSSYH ETNPAFLLKG QFDHPSSGSL VGGSEDGLDK VSSGENL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-241976158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010559054.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010559051.10.0PREDICTED: myb family transcription factor PHL7-like
RefseqXP_019056212.10.0PREDICTED: myb family transcription factor PHL7-like
RefseqXP_019056213.10.0PREDICTED: myb family transcription factor PHL7-like
RefseqXP_019056214.10.0PREDICTED: myb family transcription factor PHL7-like
RefseqXP_019056215.10.0PREDICTED: myb family transcription factor PHL7-like
RefseqXP_019056216.10.0PREDICTED: myb family transcription factor PHL7-like
SwissprotQ9SJW01e-143PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A1J3JFC11e-144A0A1J3JFC1_NOCCA; Protein PHR1-LIKE 1
STRINGXP_010559048.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-122G2-like family protein