PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010558851.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | bHLH | ||||||||
Protein Properties | Length: 235aa MW: 26815.6 Da PI: 10.0372 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.2 | 3.4e-09 | 79 | 128 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+r h ++Er RRd+ +++++ L +llP+ +K++K +i++ A + I +Lq XP_010558851.1 79 RCRRHMINERARRDKQRQSYFALHSLLPSG-----TKNDKNSIVQSALNRIGELQ 128 6788*************************7.....7***************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.96E-6 | 67 | 132 | No hit | No description |
SuperFamily | SSF47459 | 7.59E-11 | 74 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.093 | 78 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.7E-7 | 79 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.3E-8 | 82 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-6 | 84 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MDPHLLSPDF LFPEEGSFWY EVFGERSRVP VQKQSAFRPY NKADGGGAVA AGNIKRRMAD 60 LLRRNWEERR KAAAPARDRC RRHMINERAR RDKQRQSYFA LHSLLPSGTK NDKNSIVQSA 120 LNRIGELQRQ KRELERRIHV LEANLKTASE EKQIALKVED PVSGTDSMLE ALKCLKAIGA 180 KSVTIQAKFS PREFSTTMTI ESQIAGGEVE QTLEKTLQEA EWKLLFLPEA SFCKD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 75 | 83 | ARDRCRRHM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010558851.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010558851.1 | 1e-175 | PREDICTED: transcription factor bHLH92-like | ||||
Swissprot | Q9FIX5 | 1e-76 | BH092_ARATH; Transcription factor bHLH92 | ||||
TrEMBL | D7MXG4 | 1e-75 | D7MXG4_ARALL; Basic helix-loop-helix family protein | ||||
STRING | XP_010558851.1 | 1e-174 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9602 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 2e-72 | bHLH family protein |
Publications ? help Back to Top | |||
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