PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010558668.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB_related

Protein Properties

Length: 400aa MW: 44602.6 Da PI: 6.8651

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010558668.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.8	4e-16	28	72	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT E++++v+a kq+G W++I +++g ++t+ q++s+ qk+ XP_010558668.1 28 RERWTDGEHKKFVEALKQYGRA-WRRIQEHIG-TKTAVQIRSHAQKF 72 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.24E-15	22	78	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.033	23	77	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-8	25	74	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-15	26	75	IPR006447	Myb domain, plants
SMART	SM00717	6.3E-12	27	75	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-12	28	71	IPR001005	SANT/Myb domain
CDD	cd00167	2.06E-8	30	73	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MMQLNEQISG GNNSASKARK PYTITKERER WTDGEHKKFV EALKQYGRAW RRIQEHIGTK 60 TAVQIRSHAQ KFFSKIARET AGSNGSSVER IVIPPPRPKR KPMHPYPRKL GNPSAKEISG 120 TDQSRRSVSP PDLSVSEGDD QSPTSVLSSV CSDAFGSADT NSPNSILSPV SSTLPCELTL 180 SGPYGSTTTF AIEEAESLTL ELFGRERRLL SREESINPPK KQSLKLFGKT VEVKDTCCTR 240 SPLDSNEEKP IQPFLWKLSP EENILCWIQK HKQEGENSNG LEPRNLDAKE GGHQEEGSSG 300 GSNSCGSDDD DDTDRGEADK DSEVEEETPT TSHERKEIGV PEFKRSERSA FRQLKGTRPE 360 LQTKAFVPYK KRKMGIETED RYSGKRRETG EDGDICLLCL

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MMQLNEQISG GNNSASKARK PYTITKERER WTDGEHKKFV EALKQYGRAW RRIQEHIGTK  60
TAVQIRSHAQ KFFSKIARET AGSNGSSVER IVIPPPRPKR KPMHPYPRKL GNPSAKEISG  120
TDQSRRSVSP PDLSVSEGDD QSPTSVLSSV CSDAFGSADT NSPNSILSPV SSTLPCELTL  180
SGPYGSTTTF AIEEAESLTL ELFGRERRLL SREESINPPK KQSLKLFGKT VEVKDTCCTR  240
SPLDSNEEKP IQPFLWKLSP EENILCWIQK HKQEGENSNG LEPRNLDAKE GGHQEEGSSG  300
GSNSCGSDDD DDTDRGEADK DSEVEEETPT TSHERKEIGV PEFKRSERSA FRQLKGTRPE  360
LQTKAFVPYK KRKMGIETED RYSGKRRETG EDGDICLLCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	211	RERRLLSR

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010558668.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010558667.1	0.0	PREDICTED: protein REVEILLE 1-like isoform X1
Swissprot	F4KGY6	1e-94	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	E4MX62	1e-95	E4MX62_EUTHA; mRNA, clone: RTFL01-17-B24
TrEMBL	V4N7S5	1e-95	V4N7S5_EUTSA; Uncharacterized protein
STRING	XP_010558667.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	5e-78	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]