PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010558667.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB_related

Protein Properties

Length: 423aa MW: 46934.2 Da PI: 7.475

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010558667.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.3e-16	51	95	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT E++++v+a kq+G W++I +++g ++t+ q++s+ qk+ XP_010558667.1 51 RERWTDGEHKKFVEALKQYGRA-WRRIQEHIG-TKTAVQIRSHAQKF 95 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.47E-15	45	101	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.033	46	100	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-8	48	97	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-15	49	98	IPR006447	Myb domain, plants
SMART	SM00717	6.3E-12	50	98	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-12	51	94	IPR001005	SANT/Myb domain
CDD	cd00167	1.38E-8	53	96	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MASSSSAMTV QGTFRGAHLN KAPMMQLNEQ ISGGNNSASK ARKPYTITKE RERWTDGEHK 60 KFVEALKQYG RAWRRIQEHI GTKTAVQIRS HAQKFFSKIA RETAGSNGSS VERIVIPPPR 120 PKRKPMHPYP RKLGNPSAKE ISGTDQSRRS VSPPDLSVSE GDDQSPTSVL SSVCSDAFGS 180 ADTNSPNSIL SPVSSTLPCE LTLSGPYGST TTFAIEEAES LTLELFGRER RLLSREESIN 240 PPKKQSLKLF GKTVEVKDTC CTRSPLDSNE EKPIQPFLWK LSPEENILCW IQKHKQEGEN 300 SNGLEPRNLD AKEGGHQEEG SSGGSNSCGS DDDDDTDRGE ADKDSEVEEE TPTTSHERKE 360 IGVPEFKRSE RSAFRQLKGT RPELQTKAFV PYKKRKMGIE TEDRYSGKRR ETGEDGDICL 420 LCL

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MASSSSAMTV QGTFRGAHLN KAPMMQLNEQ ISGGNNSASK ARKPYTITKE RERWTDGEHK  60
KFVEALKQYG RAWRRIQEHI GTKTAVQIRS HAQKFFSKIA RETAGSNGSS VERIVIPPPR  120
PKRKPMHPYP RKLGNPSAKE ISGTDQSRRS VSPPDLSVSE GDDQSPTSVL SSVCSDAFGS  180
ADTNSPNSIL SPVSSTLPCE LTLSGPYGST TTFAIEEAES LTLELFGRER RLLSREESIN  240
PPKKQSLKLF GKTVEVKDTC CTRSPLDSNE EKPIQPFLWK LSPEENILCW IQKHKQEGEN  300
SNGLEPRNLD AKEGGHQEEG SSGGSNSCGS DDDDDTDRGE ADKDSEVEEE TPTTSHERKE  360
IGVPEFKRSE RSAFRQLKGT RPELQTKAFV PYKKRKMGIE TEDRYSGKRR ETGEDGDICL  420
LCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	227	234	RERRLLSR

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010558667.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010558667.1	0.0	PREDICTED: protein REVEILLE 1-like isoform X1
Swissprot	F4KGY6	2e-95	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	E4MX62	1e-95	E4MX62_EUTHA; mRNA, clone: RTFL01-17-B24
TrEMBL	V4N7S5	1e-95	V4N7S5_EUTSA; Uncharacterized protein
STRING	XP_010558667.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6356	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	4e-79	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]