PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558458.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 341aa    MW: 38733.5 Da    PI: 4.9437
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558458.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.4e-182976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l++++  +G g+W++ ar+ g+ Rt+k+c++rw++yl
   XP_010558458.1 29 RGPWTVEEDFKLINYIVTHGEGRWNSLARCAGLQRTGKSCRLRWLNYL 76
                     89********************************************97 PP
2Myb_DNA-binding50.45.2e-1682125146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_010558458.1  82 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 125
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1772476IPR017930Myb domain
SuperFamilySSF466895.24E-3126123IPR009057Homeodomain-like
SMARTSM007173.5E-142878IPR001005SANT/Myb domain
PfamPF002491.2E-152976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-223083IPR009057Homeodomain-like
CDDcd001671.04E-113176No hitNo description
PROSITE profilePS5129422.91777131IPR017930Myb domain
SMARTSM007172.9E-1481129IPR001005SANT/Myb domain
PfamPF002498.7E-1582125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2284130IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MDAKGRSLMN KDMNDHNNNN AEDEMDLRRG PWTVEEDFKL INYIVTHGEG RWNSLARCAG  60
LQRTGKSCRL RWLNYLRPDV RRGNITLEEQ LLILELHSRW GNRWSKIAQY LPGRTDNEIK  120
NYWRTRVQKH AKQLKCDVNS KQFKDTMRYL WMPRLVERIQ AAAAKTTASA TSACVTDSTD  180
QFNFVTTSYG TDNVSSSMGN SVDMQSLCNH PNGYNNTPEN SNAAVSPASD LSEYHSAAIN  240
PNLSNQNQNQ NPNPNPYAGD IQTGPMGSYY DSDINLVGPT TLPENYFNNN CNNVLLDEDF  300
QAAQEQSNIW FENGGSSDSL WDIGGDEDFW FLQQQLNNGS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25261294106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor contributing to the regulation of stamen maturation and male fertility in response to jasmonate signaling. Required for correct timing of anther dehiscence. Acts as a negative regulator of abscisic acid-induced cell death. Not involved in the regulation of BOI. Regulated by MYB21 and at a lower level by MYB24. Negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:20921156, ECO:0000269|PubMed:23952703}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558458.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate and pathogen infection. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558458.10.0PREDICTED: transcription factor MYB108-like
SwissprotQ9LDE11e-124MY108_ARATH; Transcription factor MYB108
TrEMBLV4M3C61e-131V4M3C6_EUTSA; Uncharacterized protein
STRINGXP_010558458.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.11e-108myb domain protein 108
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng HQ, et al.
    The cotton MYB108 forms a positive feedback regulation loop with CML11 and participates in the defense response against Verticillium dahliae infection.
    J. Exp. Bot., 2016. 67(6): p. 1935-50
    [PMID:26873979]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Chou ML, et al.
    The Direct Involvement of Dark-Induced Tic55 Protein in Chlorophyll Catabolism and Its Indirect Role in the MYB108-NAC Signaling Pathway during Leaf Senescence in Arabidopsis thaliana.
    Int J Mol Sci, 2018.
    [PMID:29937503]