PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010558035.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 648aa MW: 74087.2 Da PI: 8.3331 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.4e-07 | 466 | 507 | 2 | 40 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++W++eE +ll ++ ++++g +W+ I++++g+gR+ +++ XP_010558035.1 466 KPWSKEEVDLLRKGMVKYPKGtsrRWEVISEYIGTGRSVEEI 507 69***********************************99876 PP | |||||||
2 | Myb_DNA-binding | 27.6 | 6.9e-09 | 592 | 635 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++ + lv+a k ++++ +W+++a+ ++ g+t +qck ++ XP_010558035.1 592 WSAVQERALVQALKTFPKEtsqRWERVAAAVP-GKTVNQCKKKFA 635 ********************************.********9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46565 | 7.07E-21 | 96 | 180 | IPR001623 | DnaJ domain |
Gene3D | G3DSA:1.10.287.110 | 4.4E-20 | 98 | 202 | IPR001623 | DnaJ domain |
SMART | SM00271 | 9.4E-16 | 101 | 176 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 1.2E-16 | 102 | 181 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 18.44 | 102 | 184 | IPR001623 | DnaJ domain |
CDD | cd06257 | 8.85E-14 | 102 | 173 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 4.3E-7 | 107 | 125 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 4.3E-7 | 125 | 140 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 4.3E-7 | 156 | 176 | IPR001623 | DnaJ domain |
PROSITE pattern | PS00636 | 0 | 161 | 180 | IPR018253 | DnaJ domain, conserved site |
PROSITE profile | PS50090 | 6.168 | 460 | 515 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-5 | 462 | 507 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-6 | 464 | 517 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-6 | 466 | 507 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.02E-7 | 466 | 509 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.73E-4 | 467 | 507 | No hit | No description |
SMART | SM00717 | 7.3E-9 | 588 | 640 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.86E-9 | 590 | 644 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.12 | 592 | 638 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.75E-6 | 592 | 638 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-5 | 592 | 636 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-7 | 592 | 636 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 648 aa Download sequence Send to blast |
MQRLELSSAV KLIAYSKELV DGQPLYASSN CLPVKALKLE PAGHAFHSAA LKLLGCLEEE 60 ATENEGNNKK VTNDKDSAYI PSYDSYNNAT KGKKKSGKQQ EDHYALLGLS HLRYLATEDQ 120 IRKSYREAAL RHHPDKLASL LLAEETEEAK QAKKDEIESR FKLIQEAYEV LIDPIRRRIY 180 DSTDEFDDEI PMDCAPQDFF KVFGPAFKRN ARWSVNQPIP DLGDDTASMK DADNFYNFWY 240 GFKSWREFPH ADEYDIEQAE SRDDRRWMER QNAKLTEKAR KEEYARIRTL VDNAYKRDPR 300 IVRRKEEERA EKQRKKEAKL LAKKLQEEEA ARAAEEEKRR KEEEEKRAAE AAQQQKRAKE 360 KEKKLLRKER TRLRTLSAPL VTQHLLDISE EDVENLCMTL NTERLRDLCD KMDKKEGLDL 420 AKVLRDVCCG KNNDETGSKK QDNGKTLQQN GHAEVNGKGS SPKKEKPWSK EEVDLLRKGM 480 VKYPKGTSRR WEVISEYIGT GRSVEEILKA TKTVLLQKPD SAKAFDSFLE KRKPAATIAS 540 PLSTREELGE SKPTSTSEDT TQEESSDNNS NTQSSDNNTE AAAVVGSDPD GWSAVQERAL 600 VQALKTFPKE TSQRWERVAA AVPGKTVNQC KKKFAELKEI IRNKKTAT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5dje_A | 9e-18 | 198 | 301 | 20 | 123 | Zuotin |
5dje_B | 9e-18 | 198 | 301 | 20 | 123 | Zuotin |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010558035.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010558034.1 | 0.0 | PREDICTED: dnaJ homolog subfamily C member 2-like | ||||
Refseq | XP_010558035.1 | 0.0 | PREDICTED: dnaJ homolog subfamily C member 2-like | ||||
Refseq | XP_010558036.1 | 0.0 | PREDICTED: dnaJ homolog subfamily C member 2-like | ||||
Refseq | XP_010558037.1 | 0.0 | PREDICTED: dnaJ homolog subfamily C member 2-like | ||||
TrEMBL | A0A2P5WNB9 | 0.0 | A0A2P5WNB9_GOSBA; Uncharacterized protein | ||||
STRING | XP_010558034.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G11450.1 | 0.0 | DnaJ domain ;Myb-like DNA-binding domain |