PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010558034.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 648aa    MW: 74087.2 Da    PI: 8.3331
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010558034.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.4e-07466507240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W++eE +ll ++  ++++g   +W+ I++++g+gR+ +++
   XP_010558034.1 466 KPWSKEEVDLLRKGMVKYPKGtsrRWEVISEYIGTGRSVEEI 507
                      69***********************************99876 PP
2Myb_DNA-binding27.66.9e-09592635445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W++  +  lv+a k ++++   +W+++a+ ++ g+t +qck ++ 
   XP_010558034.1 592 WSAVQERALVQALKTFPKEtsqRWERVAAAVP-GKTVNQCKKKFA 635
                      ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465657.07E-2196180IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1104.4E-2098202IPR001623DnaJ domain
SMARTSM002719.4E-16101176IPR001623DnaJ domain
PfamPF002261.2E-16102181IPR001623DnaJ domain
PROSITE profilePS5007618.44102184IPR001623DnaJ domain
CDDcd062578.85E-14102173IPR001623DnaJ domain
PRINTSPR006254.3E-7107125IPR001623DnaJ domain
PRINTSPR006254.3E-7125140IPR001623DnaJ domain
PRINTSPR006254.3E-7156176IPR001623DnaJ domain
PROSITE patternPS006360161180IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.168460515IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.6E-5462507IPR009057Homeodomain-like
SMARTSM007175.1E-6464517IPR001005SANT/Myb domain
PfamPF002497.3E-6466507IPR001005SANT/Myb domain
SuperFamilySSF466892.02E-7466509IPR009057Homeodomain-like
CDDcd001672.73E-4467507No hitNo description
SMARTSM007177.3E-9588640IPR001005SANT/Myb domain
SuperFamilySSF466894.86E-9590644IPR009057Homeodomain-like
PROSITE profilePS500907.12592638IPR017877Myb-like domain
CDDcd001671.75E-6592638No hitNo description
Gene3DG3DSA:1.10.10.602.7E-5592636IPR009057Homeodomain-like
PfamPF002492.4E-7592636IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MQRLELSSAV KLIAYSKELV DGQPLYASSN CLPVKALKLE PAGHAFHSAA LKLLGCLEEE  60
ATENEGNNKK VTNDKDSAYI PSYDSYNNAT KGKKKSGKQQ EDHYALLGLS HLRYLATEDQ  120
IRKSYREAAL RHHPDKLASL LLAEETEEAK QAKKDEIESR FKLIQEAYEV LIDPIRRRIY  180
DSTDEFDDEI PMDCAPQDFF KVFGPAFKRN ARWSVNQPIP DLGDDTASMK DADNFYNFWY  240
GFKSWREFPH ADEYDIEQAE SRDDRRWMER QNAKLTEKAR KEEYARIRTL VDNAYKRDPR  300
IVRRKEEERA EKQRKKEAKL LAKKLQEEEA ARAAEEEKRR KEEEEKRAAE AAQQQKRAKE  360
KEKKLLRKER TRLRTLSAPL VTQHLLDISE EDVENLCMTL NTERLRDLCD KMDKKEGLDL  420
AKVLRDVCCG KNNDETGSKK QDNGKTLQQN GHAEVNGKGS SPKKEKPWSK EEVDLLRKGM  480
VKYPKGTSRR WEVISEYIGT GRSVEEILKA TKTVLLQKPD SAKAFDSFLE KRKPAATIAS  540
PLSTREELGE SKPTSTSEDT TQEESSDNNS NTQSSDNNTE AAAVVGSDPD GWSAVQERAL  600
VQALKTFPKE TSQRWERVAA AVPGKTVNQC KKKFAELKEI IRNKKTAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A9e-1819830120123Zuotin
5dje_B9e-1819830120123Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010558034.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010558034.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_010558035.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_010558036.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_010558037.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A2P5WNB90.0A0A2P5WNB9_GOSBA; Uncharacterized protein
STRINGXP_010558034.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain