PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010557603.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 28929.7 Da PI: 9.6638 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.6 | 3.7e-15 | 50 | 97 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W +eEd++l +v+ +G g+W+ I+r+ g++R +k+c++rw +yl XP_010557603.1 50 RGLWKPEEDLILRSYVEAFGEGNWADISRRTGLKRGGKSCRLRWKNYL 97 788*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 5.9e-17 | 103 | 148 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l XP_010557603.1 103 RGGMSPEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 148 6789******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.987 | 45 | 97 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-29 | 47 | 144 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-13 | 49 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-14 | 50 | 97 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-22 | 51 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.10E-10 | 53 | 97 | No hit | No description |
PROSITE profile | PS51294 | 25.801 | 98 | 152 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-16 | 102 | 150 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 103 | 148 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-24 | 105 | 151 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.38E-13 | 106 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MQSLSLSPSL YGLYKDFTIF NALLIQRERE RERERERDME KREGKCRVKR GLWKPEEDLI 60 LRSYVEAFGE GNWADISRRT GLKRGGKSCR LRWKNYLRPN IKRGGMSPEE EDLIIRMHKL 120 LGNRWSLIAG RLPGRTDNEV KNYWNTHLNK KSESSKRKAD ESGGKTQGID TDTKNKQCAS 180 PSLMASKGVM GQGREEANGE KREDSIVTSS TWTEGMNGFG YGIASPLPFP DYETSVFDDP 240 QSSFAFADMF PLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-24 | 48 | 151 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 36 | RERERERERER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010557603.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010557603.1 | 0.0 | PREDICTED: transcription factor MYB82-like isoform X2 | ||||
Swissprot | Q9LTF7 | 1e-81 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | R0GVN8 | 3e-83 | R0GVN8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010557600.1 | 1e-165 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 5e-83 | myb domain protein 82 |