PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010557447.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | YABBY | ||||||||
Protein Properties | Length: 189aa MW: 21081.9 Da PI: 9.1197 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 240.7 | 3.1e-74 | 2 | 165 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 ++ sse+vCyv CnfCntilav+vP++slf++vtvrCGhCt+lls+n+ + ++++ h +++l+ ++++++s ++++e+ s+s+ XP_010557447.1 2 SMELSSERVCYVSCNFCNTILAVNVPYASLFTIVTVRCGHCTNLLSLNMGASLHQITPPAH---------QQDLQLHKQHITSPETRKECGSSSK 87 56789***********************************************999999888.........4444444444444444444433333 PP YABBY 97 ssekl....senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+++ e+ ++e+pr+pp+ PPekrqr PsaynrfikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl XP_010557447.1 88 STTSSttssFESVEREAPRMPPIRPPPEKRQRLPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPHIHFGL 165 3322212214677899******999***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.8E-72 | 6 | 165 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 8.9E-8 | 110 | 158 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.1E-4 | 114 | 159 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MSMELSSERV CYVSCNFCNT ILAVNVPYAS LFTIVTVRCG HCTNLLSLNM GASLHQITPP 60 AHQQDLQLHK QHITSPETRK ECGSSSKSTT SSTTSSFESV EREAPRMPPI RPPPEKRQRL 120 PSAYNRFIKE EIQRIKASNP EISHREAFST AAKNWAHFPH IHFGLKLDGN KQGKQLDQAV 180 AGQKSSGYC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010557447.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010557447.1 | 1e-141 | PREDICTED: putative axial regulator YABBY 2 | ||||
Swissprot | Q9XFB0 | 1e-106 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A1J3F0Q6 | 1e-110 | A0A1J3F0Q6_NOCCA; Putative axial regulator YABBY 2 | ||||
STRING | XP_010557447.1 | 1e-140 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5581 | 27 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-86 | YABBY family protein |
Publications ? help Back to Top | |||
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