PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557446.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TALE
Protein Properties Length: 573aa    MW: 63467.4 Da    PI: 6.9944
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-093473841954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp   +++ LAk++gLt +qV++WF N R +
  XP_010557446.1 347 FEHflHPYPRDLDKQLLAKQTGLTRSQVSNWFINARVR 384
                     554459******************************88 PP
2BELL113.88.8e-37209279272
            BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     rqelq+kkakL+s++eeV++rY+qy+eq+q ++ sFe++ag g+ak+YtslAl+++S++FrcLkdai+ qi
  XP_010557446.1 209 RQELQMKKAKLVSMVEEVEHRYRQYREQMQRIVTSFEQAAGFGAAKSYTSLALQTVSKQFRCLKDAICLQI 279
                     79******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.8E-50141277IPR006563POX domain
PfamPF075261.3E-41155275IPR006563POX domain
PROSITE profilePS5007112.066325388IPR001356Homeobox domain
CDDcd000861.05E-12328389No hitNo description
SMARTSM003896.5E-9328392IPR001356Homeobox domain
SuperFamilySSF466899.41E-17329395IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-27331394IPR009057Homeodomain-like
PfamPF059204.7E-17345384IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MASFFHGGSE AREASSSSSD LTLQNQYSLL MMNPLGHALL HAPPSLSVVP TTVDMPTCTP  60
HLHHTINNNF CFSSPAVDSN AEPTCDIINP GPCGSHGPEL LSLPANAGSC KKLSLSLSSL  120
QPQTTIDHVE QGNSPVSTVT NGVVFRGGAG SFDPKYLRAA QELLDEIVSV GNANKSDCVV  180
SKGKLKVKTE FSGDVFSGGY GRELTAAYRQ ELQMKKAKLV SMVEEVEHRY RQYREQMQRI  240
VTSFEQAAGF GAAKSYTSLA LQTVSKQFRC LKDAICLQIK IISKCLGEEY SVLGGKGELF  300
RAPRTAGQGQ FRHVGIMPHL HHHHSNAWRP QRGLPERAVS ILRSWLFEHF LHPYPRDLDK  360
QLLAKQTGLT RSQVSNWFIN ARVRLWKPMV EEMYLEEMKG QEITKDDNLS EEEDDELERS  420
RQQPPSNVQL DILPDRPNLF DNNNNVSDQC SSSMVSTNCL AADSRQGIFS LHKKRNQQSD  480
HEVVEASNLI CFNNGGFENP YYHQAKVMNG NGVSLSLGLP HSRDQTFSNV QFGTGHQIEF  540
SGISRPPSTY RNIDDSKTFV ANAAAPLLPD FFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A2e-16334392563Homeobox protein Meis2
4xrm_B2e-16334392563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557446.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557446.10.0PREDICTED: BEL1-like homeodomain protein 5 isoform X2
SwissprotQ8S8971e-116BLH5_ARATH; BEL1-like homeodomain protein 5
STRINGXP_010557445.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27220.11e-117BEL1-like homeodomain 5