PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010557308.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | LBD | ||||||||
Protein Properties | Length: 212aa MW: 23344.3 Da PI: 4.7976 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.6 | 7.8e-42 | 40 | 139 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la XP_010557308.1 40 PCAACKILRRRCAEKCVLAPYFPPTEPTKFTIAHRVFGASNIIKFLQDLPESQRADAVNSMVYEAGARIRDPVYGSAGAIYHLQRQVSELQAQLA 134 7********************************************************************************************** PP DUF260 96 llkee 100 +++ e XP_010557308.1 135 KAQVE 139 99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.898 | 39 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-41 | 40 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MLKMEINGDT ATPSPPSNIS SPPFPASPQS QSQTQVVMSP CAACKILRRR CAEKCVLAPY 60 FPPTEPTKFT IAHRVFGASN IIKFLQDLPE SQRADAVNSM VYEAGARIRD PVYGSAGAIY 120 HLQRQVSELQ AQLAKAQVEL VSVQLQRANL LALLCNQPNV QDQLGPYNHL SSSFESGDDF 180 ISSPDEESND LGYFLDDNTN SSMSWWDHPL LT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-40 | 39 | 141 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-40 | 39 | 141 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010557308.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010557308.1 | 1e-158 | PREDICTED: LOB domain-containing protein 11-like isoform X2 | ||||
Swissprot | Q9SK08 | 4e-98 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A1J3HWR6 | 2e-92 | A0A1J3HWR6_NOCCA; LOB domain-containing protein 11 (Fragment) | ||||
STRING | XP_010557308.1 | 1e-157 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 1e-97 | LOB domain-containing protein 11 |