PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010557181.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 394aa MW: 44514.9 Da PI: 7.8313 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.1 | 8.6e-08 | 335 | 377 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 WTt E + ++++ + +G+ Wk+I ++ + +Rt ++k++++ XP_010557181.1 335 WTTAETQAILRGYEIHGPQ-WKLIKEENPilAHRTNVNIKDKFR 377 *****************88.**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-8 | 326 | 382 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.865 | 327 | 384 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.52E-7 | 329 | 380 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0042 | 331 | 382 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 1.5E-5 | 335 | 379 | No hit | No description |
CDD | cd11660 | 1.19E-11 | 335 | 381 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MGLSRRKNAI LREISKELEN GLVEEENLER LEILEEILRE EGTEIPESLK EAYRQVAMEC 60 TVRCLLYGVD MKRSLIEAIR RIWTKRVMAL CDKSSSLVTR ELRDDCRRLK LALTDEKVCD 120 TLIEYRAKNK PLVSLKKLFS ELHRETGASE HEESPDEAGE AEASGNRSSS SQDDGKGKEI 180 VLVNALPELI PDYEQFIISN DGELVLVAEH SRPPIKPIPT PVFDRVFKDL KASKQDMVKA 240 LEKAKASGLN DVSKKENLVM AKANLSSHED APKPTLMARS SKAQTYEWED SIDDSTEESN 300 GDGGKANISK RKKMAMSPLR KDGASKGPRK MKIGWTTAET QAILRGYEIH GPQWKLIKEE 360 NPILAHRTNV NIKDKFRVEM RRQEACGRTA RGLM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 310 | 331 | RKKMAMSPLRKDGASKGPRKMK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010557181.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010557181.1 | 0.0 | PREDICTED: uncharacterized protein LOC104826267 isoform X3 | ||||
STRING | XP_010557179.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06910.1 | 1e-74 | TRF-like 7 |