PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010557179.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 395aa    MW: 44664 Da    PI: 7.8295
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010557179.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.7e-08335377445
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 
                      WTt E + ++++ + +G+  Wk+I ++ +   +Rt  ++k++++
   XP_010557179.1 335 WTTAETQAILRGYEIHGPQ-WKLIKEENPilAHRTNVNIKDKFR 377
                      *****************88.**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-8326382IPR009057Homeodomain-like
PROSITE profilePS512949.865327384IPR017930Myb domain
SuperFamilySSF466894.45E-7329380IPR009057Homeodomain-like
SMARTSM007170.0042331382IPR001005SANT/Myb domain
CDDcd116601.13E-11335381No hitNo description
PfamPF139211.4E-5335379No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGLSRRKNAI LREISKELEN GLVEEENLER LEILEEILRE EGTEIPESLK EAYRQVAMEC  60
TVRCLLYGVD MKRSLIEAIR RIWTKRVMAL CDKSSSLVTR ELRDDCRRLK LALTDEKVCD  120
TLIEYRAKNK PLVSLKKLFS ELHRETGASE HEESPDEAGE AEASGNRSSS SQDDGKGKEI  180
VLVNALPELI PDYEQFIISN DGELVLVAEH SRPPIKPIPT PVFDRVFKDL KASKQDMVKA  240
LEKAKASGLN DVSKKENLVM AKANLSSHED APKPTLMARS SKAQTYEWED SIDDSTEESN  300
GDGGKANISK RKKMAMSPLR KDGASKGPRK MKIGWTTAET QAILRGYEIH GPQWKLIKEE  360
NPILAHRTNV NIKDKFRVEM RRQEACGRTA RVSYT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310331RKKMAMSPLRKDGASKGPRKMK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010557179.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010557179.10.0PREDICTED: uncharacterized protein LOC104826267 isoform X1
STRINGXP_010557179.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149101111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06910.11e-74TRF-like 7