PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010556652.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 321aa MW: 35471.6 Da PI: 6.9913

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010556652.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	96.1	5.4e-30	5	135	5	127
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 + F+P +eel+++yL++k++g++ +e+ i+e++i+++eP++Lp ++k +++++++F++r++k + +r++r+t++g Wk tgk+ v++++g XP_010556652.1 5 YTFNPPEEELINHYLNNKIAGNDDLVESEINEINICQHEPHNLPGQAKIRSSNTWYFVSRAEKFGRCNRTKRTTRTGHWKVTGKSCLVKDSGGVP 99 68*******************888778***********77777777666777777888899************************ PP NAM 100 vglkktLvfykgrapkge........ktdWvmheyr 127 +g kk Lvf + +a++++ +++Wv+he++ XP_010556652.1 100 IGFKKFLVFQESKASSSSsssrnlphRSTWVIHEFH 135 ******65444433334444559******9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	34.126	1	154	IPR003441	NAC domain
Pfam	PF02365	6.0E-17	5	135	IPR003441	NAC domain
SuperFamily	SSF101941	5.36E-34	5	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MARPYTFNPP EEELINHYLN NKIAGNDDLV ESEINEINIC QHEPHNLPGQ AKIRSSNTWY 60 FVSRAEKFGR CNRTKRTTRT GHWKVTGKSC LVKDSGGVPI GFKKFLVFQE SKASSSSSSS 120 RNLPHRSTWV IHEFHSLLQH RNKDVFVLCK LMKKGGSGGS VASTDPFLSD PHEQKITAGG 180 DVIMPMSSMV HNHYNDAEEL FPEFHHNPNW FSVDLLLQSH FHPLQPQSFA HPIPTWNGGV 240 PIGEADSGMN PNYQETGELA CGSHVYGPNT EVSGGVGGYG SSGQTRFQTG SKAGTLGFVD 300 PRDLDILTRG DISFDTPPTL P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-15	5	158	21	169	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-15	5	158	21	169	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-15	5	158	21	169	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-15	5	158	21	169	NO APICAL MERISTEM PROTEIN
3swm_A	2e-15	5	158	24	172	NAC domain-containing protein 19
3swm_B	2e-15	5	158	24	172	NAC domain-containing protein 19
3swm_C	2e-15	5	158	24	172	NAC domain-containing protein 19
3swm_D	2e-15	5	158	24	172	NAC domain-containing protein 19
3swp_A	2e-15	5	158	24	172	NAC domain-containing protein 19
3swp_B	2e-15	5	158	24	172	NAC domain-containing protein 19
3swp_C	2e-15	5	158	24	172	NAC domain-containing protein 19
3swp_D	2e-15	5	158	24	172	NAC domain-containing protein 19
4dul_A	2e-15	5	158	21	169	NAC domain-containing protein 19
4dul_B	2e-15	5	158	21	169	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010556652.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010556652.1	0.0	PREDICTED: NAC domain-containing protein 1 isoform X1
Refseq	XP_010556654.1	0.0	PREDICTED: NAC domain-containing protein 1 isoform X1
TrEMBL	A0A3P6DBT8	2e-67	A0A3P6DBT8_BRACM; Uncharacterized protein
STRING	XP_010556652.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14815	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04430.1	1e-53	NAC domain containing protein 49