PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G04430.1
Common Nameanac049, NAC049, T27C4.7
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 198aa    MW: 22506 Da    PI: 5.8358
Description NAC domain containing protein 49
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G04430.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.44.5e-3051366127
          NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102
                   F+P +eel+++yL++k+++++  + + i+ev+i+++eP dLp  +k e++  wyf s+ +k   + +r++r+ +sg Wk tg+++++++ +g+ +gl
  AT3G04430.1   5 TFNPPEEELINYYLNNKITENDDLVGKQIAEVNILHHEPADLPGLAKIESShTWYFISPVEK-FGKLNRTKRVSRSGHWKITGNSRTIKDVDGNPIGL 101
                  7*********************888788***************6444444526777766655.67889****************************** PP

          NAM 103 kktLvfy..........kgrapkgektdWvmheyr 127
                  kk Lvf           + ++ + +kt+W++he++
  AT3G04430.1 102 KKFLVFQenkrssssslSTTTTQQQKTNWIIHEFH 136
                  *******666555554435666778*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.1291152IPR003441NAC domain
PfamPF023653.7E-184136IPR003441NAC domain
SuperFamilySSF1019418.11E-336148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007275Biological Processmulticellular organism development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MYRCTFNPPE EELINYYLNN KITENDDLVG KQIAEVNILH HEPADLPGLA KIESSHTWYF  60
ISPVEKFGKL NRTKRVSRSG HWKITGNSRT IKDVDGNPIG LKKFLVFQEN KRSSSSSLST  120
TTTQQQKTNW IIHEFHSFLP HPNKMLTENK NEDYGGDYCN GLDELLQSLE QGESSGLLFG  180
ENGHACEQDT AENSNVTM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-15615423157NO APICAL MERISTEM PROTEIN
1ut4_B6e-15615423157NO APICAL MERISTEM PROTEIN
1ut7_A6e-15615423157NO APICAL MERISTEM PROTEIN
1ut7_B6e-15615423157NO APICAL MERISTEM PROTEIN
4dul_A6e-15615423157NAC domain-containing protein 19
4dul_B6e-15615423157NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO183968830.0
Expression AtlasAT3G04430-
AtGenExpressAT3G04430-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G04430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G04430
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0222871e-161AC022287.9 Arabidopsis thaliana chromosome III BAC T27C4 genomic sequence, complete sequence.
GenBankCP0026861e-161CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_187093.11e-148NAC domain containing protein 49
TrEMBLQ9M8441e-146Q9M844_ARATH; NAC domain containing protein 49
STRINGAT3G04430.11e-147(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148151520
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ooka H, et al.
    Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
    DNA Res., 2003. 10(6): p. 239-47
    [PMID:15029955]