PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010556599.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 181aa    MW: 19639.1 Da    PI: 8.057
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010556599.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.5e-193484155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+++l+g
  XP_010556599.1 34 PVYRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAALCLKG 84
                    68*****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-123484IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-213594IPR016177DNA-binding domain
PROSITE profilePS5103223.7363592IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-313593IPR001471AP2/ERF domain
SMARTSM003801.6E-353598IPR001471AP2/ERF domain
PRINTSPR003678.9E-133647IPR001471AP2/ERF domain
CDDcd000188.05E-323693No hitNo description
PRINTSPR003678.9E-137494IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MIQLPLTGDG PTTNVSAVKP KASGRSGGGG TRHPVYRGVR KRRWGKWVSE IREPRKKSRI  60
WLGSFPVPEM AAKAYDVAAL CLKGRKASLN FPDEVDDLPR PSTCTARDIQ AAASKAAHAV  120
KTRSNPDDEV VASDIEDGNV NGDNFWENIE LPELMLTGGW SSTFVNGDAT WLVDGEFTAC  180
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-182896776Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010556599.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010556599.11e-132PREDICTED: ethylene-responsive transcription factor ERF023-like isoform X1
RefseqXP_019059614.11e-132PREDICTED: ethylene-responsive transcription factor ERF023-like isoform X2
SwissprotQ1ECI24e-70ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLR0IN746e-71R0IN74_9BRAS; Uncharacterized protein
STRINGXP_010556599.11e-131(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.13e-71ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]