PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555657.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 731aa    MW: 80766.6 Da    PI: 5.2861
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555657.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.63.4e-2159114156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++k ++++++q++eLe+lF+++++p++++r eL+++lgL+ +q+k+WFqNrR+++k
  XP_010555657.1  59 KKKYHRHSPYQIQELESLFKECPHPDEKQRLELSRRLGLEGNQIKFWFQNRRTQMK 114
                     79999************************************************999 PP
2START177.57.9e-562504732206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     la++a++el+k+a+++ p+W k++    e +n de+++ f+ +       +  ea+r++g+v  ++  lve+l+d + +W+e+++     a+t++
  XP_010555657.1 250 LALAAMDELIKLADSNYPLWIKYPnsekEALNHDEYRRVFSGTSCitsagFVAEASRETGLVLSNSLALVETLMDAN-RWTEMFEsivaTASTIK 343
                     6899**********************99999*********55444999999**************************.**********9****** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     vissg      g lqlm ae+q++splvp R + ++Ry++q+++g w++vdvS d + + p+ +s+v +++lpSg++i++ +ng skvtwveh +
  XP_010555657.1 344 VISSGtggtmdGWLQLMRAEFQVISPLVPtRQVKYLRYCKQQEEGLWAVVDVSSDINGEDPNLQSYVGCRRLPSGCIIQDIGNGCSKVTWVEHSE 438
                     ****************************************************98877777779******************************** PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     ++++ +h l+r+l++sg+ +ga +w+ tlqrqce+
  XP_010555657.1 439 YDESNVHRLFRPLLSSGRGFGAERWLVTLQRQCES 473
                     *********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-2144116IPR009057Homeodomain-like
SuperFamilySSF466891.8E-2047116IPR009057Homeodomain-like
PROSITE profilePS5007117.50856116IPR001356Homeobox domain
SMARTSM003891.1E-1858120IPR001356Homeobox domain
PfamPF000467.8E-1959114IPR001356Homeobox domain
CDDcd000869.38E-1766116No hitNo description
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PROSITE profilePS5084841.878240476IPR002913START domain
SuperFamilySSF559611.04E-31243474No hitNo description
CDDcd088751.77E-112244472No hitNo description
SMARTSM002343.0E-46249473IPR002913START domain
PfamPF018529.9E-49250473IPR002913START domain
SuperFamilySSF559615.77E-17494717No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MNGHGDIGLC GEIFDPTFLE RIRDDEYENR SGSDNLGSVS ADDQEAGGGQ EHHHPKKKKK  60
KYHRHSPYQI QELESLFKEC PHPDEKQRLE LSRRLGLEGN QIKFWFQNRR TQMKTQLERH  120
ENAILREENE KLIAENNLLK VAMRSPMCNV CGGPAVPGEV TFEQQNLGIE NARLKDELSR  180
VCGLANKFLV GPVSALAGPF PRPSVLDALY SGFPVGRTGG TGIDFSDGPA PIKPEVGNEL  240
MYERSMFIDL ALAAMDELIK LADSNYPLWI KYPNSEKEAL NHDEYRRVFS GTSCITSAGF  300
VAEASRETGL VLSNSLALVE TLMDANRWTE MFESIVATAS TIKVISSGTG GTMDGWLQLM  360
RAEFQVISPL VPTRQVKYLR YCKQQEEGLW AVVDVSSDIN GEDPNLQSYV GCRRLPSGCI  420
IQDIGNGCSK VTWVEHSEYD ESNVHRLFRP LLSSGRGFGA ERWLVTLQRQ CESFQTILSS  480
LDDPIDNHTG LSPAGEKSIL KLAQRMAVNF YAGISRSSVR KWDKLLVANV GEDMRIRTRK  540
NLIDPGEPSG IVLSAATSVW LPLDPWRLFD FLRDPKCRNQ WDILSNGSSM QEMIRLPKGQ  600
HQGNCVSVLR TSGIDQAEST MLILQETWTD ASGSLVMYAP VDVSSMNVVM NGGDSAYVAL  660
LPSGFSILPD DGGMMKPESD GFGGGGSGCL LSIGFQILVN SLPNARFNVE SVGTVNNLIS  720
CTIDKIKAAL Q
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGC-3'. {ECO:0000269|PubMed:16778018}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555657.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555655.10.0PREDICTED: homeobox-leucine zipper protein HDG7-like isoform X2
SwissprotQ9LTK30.0HDG7_ARATH; Homeobox-leucine zipper protein HDG7
TrEMBLA0A1U8NWL90.0A0A1U8NWL9_GOSHI; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
TrEMBLA0A1U8NZ740.0A0A1U8NZ74_GOSHI; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X3
STRINGXP_010555654.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52170.10.0homeodomain GLABROUS 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]