PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555647.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 428aa    MW: 46839.9 Da    PI: 7.4308
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555647.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.55.5e-09104125426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C+f+ + G C+yG++C++ H+
  XP_010555647.1 104 KVCKFWVE-GNCPYGEKCRYLHS 125
                     68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.392450IPR000571Zinc finger, CCCH-type
SMARTSM003560.0842449IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.117100127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-7100125IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-7102126IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6103125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-8104124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.2E-46125420IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0015131170IPR001680WD40 repeat
SuperFamilySSF509783.11E-47132422IPR017986WD40-repeat-containing domain
PfamPF004000.21134170IPR001680WD40 repeat
PROSITE profilePS5029419.565138340IPR017986WD40-repeat-containing domain
PROSITE profilePS5008211.979138179IPR001680WD40 repeat
PRINTSPR003203.6E-6157171IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780157171IPR019775WD40 repeat, conserved site
SMARTSM003202.8210247IPR001680WD40 repeat
SMARTSM003207.0E-5254291IPR001680WD40 repeat
PfamPF004000.0029256291IPR001680WD40 repeat
PROSITE profilePS5008212.213261300IPR001680WD40 repeat
PRINTSPR003203.6E-6278292IPR020472G-protein beta WD-40 repeat
SMARTSM003200.0012294331IPR001680WD40 repeat
PfamPF004000.0018296330IPR001680WD40 repeat
PRINTSPR003203.6E-6318332IPR020472G-protein beta WD-40 repeat
SMARTSM003207335378IPR001680WD40 repeat
SMARTSM003204.7381418IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MDLDMNGGNK RVYHRLGGPP APSDSKQKVC FHWRAGRCNR FPCPYLHREI PAPGHATASS  60
STNKRVADES GFASSSHRRG PRFNGNGNSW GRFGGSRTVT KTEKVCKFWV EGNCPYGEKC  120
RYLHSWSIGD SFSLLTQLDG HQKLVSAIAL PLGLDKLYTA SQDETLRIWD CSSGQCTGVV  180
NLGGEVGCMI SEGPWLLVGM PNLVKAWNIQ NNSDQSLTGP VGQVYSLVVG NDLLFAGTQD  240
GSILAWRYNT ITNSFDPVAS LKGHTRAVVS LYVGGNRLYS GSMDNSIKVW SLDNLQCIQT  300
LTEHNSVVMS LICWDQFLLS CSLDNTVKVW VATEGGNLEV TYTHNEEHGV LALCGMHDAE  360
AKPVLLCSCN DNSLRLYDLP SFAERGKIFA KEEIRSIEIG PGGLFFTGDG SGQVKVWKWK  420
TDPTATSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-191174218323Tako8
6g6n_A1e-191174218323Tako8
6g6n_B1e-191174218323Tako8
6g6n_C1e-191174218323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555647.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555647.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLR0GZR90.0R0GZR9_9BRAS; Uncharacterized protein
STRINGXP_010555647.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1