PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010555638.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Trihelix

Protein Properties

Length: 857aa MW: 96388 Da PI: 6.6724

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010555638.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.1	2.2e-08	91	148	20	77
trihelix 20 rlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 + +rgk ++ + +ev++++ + g++r +k+ kw+n+ ++++k+ e+e++++ ++ s XP_010555638.1 91 QPGRGKTRAEKDREVAEFLNRNGINRDAKTAGTKWDNMLGEFRKVYEWERGGEGDRFS 148 5568899999****************************************98655554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	2.38E-12	708	848	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	3.1E-5	713	810	No hit	No description
CDD	cd00180	8.76E-9	721	846	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 857 aa Download sequence Send to blast
MVVFATATAS KPISPPSTSA AAAGSSSETA GSSPPSQPEQ LDTEPFHHQF RKGKYVSPVW 60 KPNEMLWLAR AWRLQYQTVT GSGHENPETG QPGRGKTRAE KDREVAEFLN RNGINRDAKT 120 AGTKWDNMLG EFRKVYEWER GGEGDRFSGK TYFRLSPYER KQHRLPASFD EEVFEELAQF 180 MGPRVRAPSS RGVAPAATAT LPPPPPPPPP HCSRDDDTYI PSGRGKRLAL TTIGDHSGQF 240 PYSNFARGST LFSSSLCDPA FETIPTQKDL RRIGKIRMTW EESMSLWAEE GETHHGRIRV 300 NGSSFLSVDE LMFFDDSMVV CSMESFDDGP LKGLSLDKFM PGQHLKVFGR RKSTPSASSS 360 SSGVMERAQF PFLEPLTRQI PAYEFQDPSE HYLSCLRVSP VSLPSIFELS WHLQEPPPED 420 LRFPVRKDVF RDLPPGKDLF FTTSSSELLD CRAITYDIIS PVMARLNPNF AVSSKDSLIP 480 LWEDCVNRIV SKFCPVEIAF MRKPSSSNLG DDDTNVQDQW PNVIGFVKGF GLWRGEEADN 540 IREGEAKPSS RLAEKLLWSY NDLPYIIGYY AIGFNVTFCA LSRSQDRVIC TDLYSFNVSS 600 PSDRVKALVP CYRLACLLPL LADRCINGGD HSNSGKKFCF SDFDRFDNGD HVTEMTPNTV 660 TKYYTSKRKW TAVKEIYDFL DLRVPHAEHL TRSSERNMSL TFKPRGVKVK PRSVDQLVES 720 LMCVTKALVA LHDLSFMHRD LGWDKVALTA RSVDWSTDTV EWILCGFEEA ADAPQLNPRE 780 AGEERGRHAP EMGRGLHGVK VDVWGVGFLI RTCELRDVKM LKELETKCLE PNPELRPTAA 840 DCYHYLLQVQ SAASPPY

Sequence ? help Back to Top

Protein Sequence Length: 857 aa Download sequence Send to blast

MVVFATATAS KPISPPSTSA AAAGSSSETA GSSPPSQPEQ LDTEPFHHQF RKGKYVSPVW  60
KPNEMLWLAR AWRLQYQTVT GSGHENPETG QPGRGKTRAE KDREVAEFLN RNGINRDAKT  120
AGTKWDNMLG EFRKVYEWER GGEGDRFSGK TYFRLSPYER KQHRLPASFD EEVFEELAQF  180
MGPRVRAPSS RGVAPAATAT LPPPPPPPPP HCSRDDDTYI PSGRGKRLAL TTIGDHSGQF  240
PYSNFARGST LFSSSLCDPA FETIPTQKDL RRIGKIRMTW EESMSLWAEE GETHHGRIRV  300
NGSSFLSVDE LMFFDDSMVV CSMESFDDGP LKGLSLDKFM PGQHLKVFGR RKSTPSASSS  360
SSGVMERAQF PFLEPLTRQI PAYEFQDPSE HYLSCLRVSP VSLPSIFELS WHLQEPPPED  420
LRFPVRKDVF RDLPPGKDLF FTTSSSELLD CRAITYDIIS PVMARLNPNF AVSSKDSLIP  480
LWEDCVNRIV SKFCPVEIAF MRKPSSSNLG DDDTNVQDQW PNVIGFVKGF GLWRGEEADN  540
IREGEAKPSS RLAEKLLWSY NDLPYIIGYY AIGFNVTFCA LSRSQDRVIC TDLYSFNVSS  600
PSDRVKALVP CYRLACLLPL LADRCINGGD HSNSGKKFCF SDFDRFDNGD HVTEMTPNTV  660
TKYYTSKRKW TAVKEIYDFL DLRVPHAEHL TRSSERNMSL TFKPRGVKVK PRSVDQLVES  720
LMCVTKALVA LHDLSFMHRD LGWDKVALTA RSVDWSTDTV EWILCGFEEA ADAPQLNPRE  780
AGEERGRHAP EMGRGLHGVK VDVWGVGFLI RTCELRDVKM LKELETKCLE PNPELRPTAA  840
DCYHYLLQVQ SAASPPY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010555638.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010555638.1	0.0	PREDICTED: uncharacterized protein LOC104825083
TrEMBL	A0A178USL0	0.0	A0A178USL0_ARATH; Uncharacterized protein
STRING	XP_010555638.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8356	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-07	Trihelix family protein