PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555437.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 299aa    MW: 32325.4 Da    PI: 8.7494
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555437.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.5e-18138192256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F+++++++ +++  LA++l+L  rqV vWFqNrRa+ k
  XP_010555437.1 138 RKKLRLTKEQSALLEESFKQHSTLNPKQKLALARQLNLRPRQVEVWFQNRRARTK 192
                     788899***********************************************98 PP
2HD-ZIP_I/II125.23e-40138227191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq++lLEesF+++++L+p++K +lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  XP_010555437.1 138 RKKLRLTKEQSALLEESFKQHSTLNPKQKLALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 227
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-17117195IPR009057Homeodomain-like
PROSITE profilePS5007117.281134194IPR001356Homeobox domain
SuperFamilySSF466893.76E-18136202IPR009057Homeodomain-like
SMARTSM003893.0E-15136198IPR001356Homeobox domain
CDDcd000861.23E-15138195No hitNo description
PfamPF000461.4E-15138192IPR001356Homeobox domain
PROSITE patternPS000270169192IPR017970Homeobox, conserved site
PfamPF021835.8E-10194228IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.7E-26194237IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGHLDDSCNA GLVLGLGLTP TTANYNHAIM KRSSSNVNAV NHQILEPSLT LSLSGDSYKK  60
RTAEEPSVTV AGGGGGSGDH QLCRQASSHS GVSSFSSGRV KRERDIGGGY GGEEAETETE  120
RVSSRISDPE DEESVNARKK LRLTKEQSAL LEESFKQHST LNPKQKLALA RQLNLRPRQV  180
EVWFQNRRAR TKLKQTEVDC EFLKKCCETL TDENRRLQKE LQELKALKLA QPFYMHMPAA  240
TLTMCPSCER IAGAGAVSGG GGRGSTAAVV DGSGTKVPTF SMAAKPHFFN PFTNPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186194RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555437.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555437.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-126HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A1R3GED21e-126A0A1R3GED2_COCAP; Uncharacterized protein
STRINGXP_010555437.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.15e-98HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]