PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010555411.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 26999.3 Da PI: 6.3208 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.2 | 4.4e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsst kl+eyss XP_010555411.1 9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTSKLFEYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 48.4 | 4.1e-17 | 91 | 170 | 18 | 97 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + e+++L ke+ + + +R++ G++L+ L+++eLqqLe++Le +l+++ +kK+e ++++i++lq+k +l e+nk+Lr++ XP_010555411.1 91 DSEHSRLSKELVEKSHRLRQMRGDELQGLDMEELQQLEKALEAGLNRVIEKKSEKIMNEINDLQRKGIQLMEQNKRLRQQ 170 568999999998889999************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.969 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.23E-32 | 3 | 88 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.17E-39 | 3 | 77 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.466 | 87 | 181 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.7E-15 | 92 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MSREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TSKLFEYSSS 60 SMKKMIERHS SQSKNSEKLN RPSLELQLVD DSEHSRLSKE LVEKSHRLRQ MRGDELQGLD 120 MEELQQLEKA LEAGLNRVIE KKSEKIMNEI NDLQRKGIQL MEQNKRLRQQ GVQLMDENER 180 LGQRISNGYE RYGDAESENA VEEGGNSSES VTNAGNSTGA PVDCESSDTS LKLGLPYGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-21 | 1 | 70 | 1 | 70 | MEF2C |
5f28_B | 2e-21 | 1 | 70 | 1 | 70 | MEF2C |
5f28_C | 2e-21 | 1 | 70 | 1 | 70 | MEF2C |
5f28_D | 2e-21 | 1 | 70 | 1 | 70 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010555411.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010555411.1 | 1e-173 | PREDICTED: MADS-box protein SVP-like | ||||
Swissprot | Q9FVC1 | 1e-133 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | I6TS44 | 1e-131 | I6TS44_BRAJU; MADS-box protein SVP | ||||
STRING | XP_010555411.1 | 1e-172 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4190 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-124 | MIKC_MADS family protein |