PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555058.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 703aa    MW: 76949.4 Da    PI: 6.5081
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555058.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.1e-09306326526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f + GtCk+Gd C +aHg
  XP_010555058.1 306 PCPDFKK-GTCKRGDLCEYAHG 326
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.03E-1647168IPR020683Ankyrin repeat-containing domain
PfamPF127962.0E-1183156IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.44187180IPR020683Ankyrin repeat-containing domain
SMARTSM002480.2387117IPR002110Ankyrin repeat
PRINTSPR014152.4E-588103IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.1E-1689169IPR020683Ankyrin repeat-containing domain
CDDcd002041.93E-1589183No hitNo description
PROSITE profilePS5008811.915122157IPR002110Ankyrin repeat
SMARTSM002484.2E-4122154IPR002110Ankyrin repeat
PRINTSPR014152.4E-5141155IPR002110Ankyrin repeat
SMARTSM003566.4E-5301327IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-7306326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4306328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526306328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4334364IPR000571Zinc finger, CCCH-type
SMARTSM0035674336359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MCSVSDKLDS GGNSLTSSSE QESESQDKAM NGSIGETESE CSFLALLEFA ADNDVESFKR  60
HLLDASRVNQ IGLWYSRQSF LRKMVLEPRT PLMVAAMYGS VDVVKLILSF QEVDLNMMCG  120
SDKTTALHCA ATGASVDSLD VVKLLLSSGA DPNIPDAHGN RPVDVLAVSR LVSNSKTILQ  180
EILKKDEPIS EDLHASSSSL GSSFRSLSSS PDNDSSLLSS DSVSSPTKPN GADGPFVSEK  240
KEYPIDPSLP DIKSGIYSTD EFRMFSFKIR PCSRAYSHDW TECPFAHPGE NARRRDPRKF  300
HYTCVPCPDF KKGTCKRGDL CEYAHGVFEC WLHPAQYRTR LCKDGMSCNR RVCFFAHTNE  360
ELRPLYASTG SGLPSPRSSS VCASTMDMAT VLNMLPGSPS AAQHSFTPTM SPSGNGMAHP  420
PMGWPQQNIP ALHLPGSNLQ LSRLRSSLNA RDIPAEELSM LQDFEIQRQR QQLVGDMSSP  480
RFMNHSGRVK SPAPSNLDEL YSPEVSSPRF SDQLAVSSIL SPSHKSALLK QSMLAPVKTN  540
LMSPKNVEHP LLQSSFGGSS LGKMSPRAVE PISPMNSRLA SLSQQQLHSR SLSSRDLGSA  600
DVGSPLSPWS RWDQSKGSSK VDWSVQSDEL GRLRKSHSLA NPSDETDVSW VQPLLKESAS  660
RFNPAAAGQA RQEGWSLNPQ NDARESDILD AWLEQLQLDR MVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555058.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555058.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like isoform X1
RefseqXP_019059410.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like isoform X2
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLE4MVH50.0E4MVH5_EUTHA; mRNA, clone: RTFL01-01-B13
TrEMBLV4KTE70.0V4KTE7_EUTSA; Uncharacterized protein
STRINGXP_010555058.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain