PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554995.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 305aa    MW: 33524.5 Da    PI: 7.0716
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554995.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.52.8e-28174234259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dD y+WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r ++dp ++ +tY+g+H+++
  XP_010554995.1 174 DDNYTWRKYGQKEILGSRFPRAYYRCTHQklyNCPAKKQVQRLDDDPFTFRVTYRGSHTCH 234
                     8****************************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-27168234IPR003657WRKY domain
SuperFamilySSF1182905.1E-26170235IPR003657WRKY domain
SMARTSM007748.1E-37173235IPR003657WRKY domain
PROSITE profilePS5081121.115174236IPR003657WRKY domain
PfamPF031069.3E-26174234IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEEIMAMIFH GFELVKELES NLPEKPPESL SVSLDSIAKT FGEANERLKN LMSSSDVRPN  60
RPLTPVFSGS DQVLLHMDSG GLMHEYWLRP GVSQGIDAVI HTQTHLMAAT GRGNTPAAAE  120
AEGSGQLRPG ERTDSAGGSG SSTPRPRRRS KEEGIQQTVL VAAPRMGNTE VPPDDNYTWR  180
KYGQKEILGS RFPRAYYRCT HQKLYNCPAK KQVQRLDDDP FTFRVTYRGS HTCHVSPTAP  240
VSSSAAAATS TSAAVPYVAE VADMANAMFD FSRGSSSAGD MDFVFPVRGH EYHLRRDSPE  300
RKDGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-21174233968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554995.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554995.20.0PREDICTED: WRKY transcription factor 55-like, partial
SwissprotQ9SHB51e-108WRK55_ARATH; WRKY transcription factor 55
TrEMBLD7LFT81e-110D7LFT8_ARALL; WRKY DNA-binding protein 55
STRINGXP_010554995.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-97WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]