PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010554975.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

HD-ZIP

Protein Properties

Length: 241aa MW: 27551.2 Da PI: 9.4535

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010554975.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.1e-18	111	165	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq + Le+ F++n++++ +++ eLAk+l L rq+ vWFqNrRa+ k XP_010554975.1 111 RKKLRLTREQSRLLEDSFRQNHTLNPKQKGELAKQLVLRPRQIEVWFQNRRARCK 165 78889************************************************98 PP
2	HD-ZIP_I/II	117.3	8.9e-38	111	199	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl++eq++lLE+sF+++++L+p++K ela++L l+prq++vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeL + XP_010554975.1 111 RKKLRLTREQSRLLEDSFRQNHTLNPKQKGELAKQLVLRPRQIEVWFQNRRARCKSKQTEMECEYLKRRFGSLTEQNRRLKREVEELS-A 199 69*************************************************************************************8.3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.34E-18	106	169	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.649	107	167	IPR001356	Homeobox domain
SMART	SM00389	6.3E-17	109	171	IPR001356	Homeobox domain
CDD	cd00086	5.65E-16	110	168	No hit	No description
Pfam	PF00046	1.4E-15	111	165	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.6E-17	116	165	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	142	165	IPR017970	Homeobox, conserved site
SMART	SM00340	5.3E-17	167	210	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	9.2E-9	167	201	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MRVCMCIYRY KPVIGIQVCL FIFXVTIDYY YXSSLKTLPS SSEVTLMAIL PENSSNLGLT 60 IYVSGFSSSP HPEETGGRGR EQLSLDINRP PLSEEDDELI GRGNDAVLPP RKKLRLTREQ 120 SRLLEDSFRQ NHTLNPKQKG ELAKQLVLRP RQIEVWFQNR RARCKSKQTE MECEYLKRRF 180 GSLTEQNRRL KREVEELSAM KVAVPATSAS ASTLTMCRRC HLTTASPVAN LPPREEAHEG 240 R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	167	RRARCKSKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010554975.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019059203.1	1e-141	PREDICTED: homeobox-leucine zipper protein ATHB-17-like
Swissprot	Q8S9N6	2e-94	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	A0A087GU16	1e-83	A0A087GU16_ARAAL; Uncharacterized protein
STRING	XP_010554975.1	1e-176	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4890	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	9e-92	homeobox-leucine zipper protein 17

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]