PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554845.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 710aa    MW: 77576.1 Da    PI: 6.2859
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554845.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07290310526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  XP_010554845.1 290 PCPDFRK-GACRRGDMCEYAHG 310
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.04E-1687181IPR020683Ankyrin repeat-containing domain
CDDcd002046.89E-1588181No hitNo description
Gene3DG3DSA:1.25.40.206.4E-1788182IPR020683Ankyrin repeat-containing domain
PfamPF127966.5E-1188158IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.2989196IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001289119IPR002110Ankyrin repeat
PRINTSPR014155.5E-590105IPR002110Ankyrin repeat
PROSITE profilePS5008811.701124159IPR002110Ankyrin repeat
SMARTSM002480.067124156IPR002110Ankyrin repeat
PRINTSPR014155.5E-5143157IPR002110Ankyrin repeat
SMARTSM003564.0E-6285311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-4290312IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582290312IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-5290310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4318348IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.409320344IPR000571Zinc finger, CCCH-type
SMARTSM0035667320343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MCCGSDRLNL ILSSRSSTLD FIGDNVLAPY TDMNHLTVET EDTFASLLEL AANNDVEGFR  60
LSLVRDPSCV DEVGLWYGRQ KGSRSMVNDQ RTPLMVAATY GSIDVIKLII SFSDADVNRT  120
CGNYKTTALH SAASGGAVNA GEVVKLLLAA GADPNLPDAD GRRAVDVVMV PPKLEGMKLI  180
LQELLSADGS MAADRNLRVV TGLPHSPDGS PPDSPLKFKS PEAKREYPVD PSLPDIKNSI  240
YSTDEFRMYS FKVRPCSRAY SHDWTECPFV HPGENARRRD PRKFHYSCVP CPDFRKGACR  300
RGDMCEYAHG VFECWLHPAQ YRTRLCKDGT GCGRRVCFFA HTPEELRPLY VSTGSAIPSP  360
RSSSDFAAAM SLLPGSPSSV SVMSPSPFTP PPMSPSGAGN GMSHSNMAWP QPNVPALHLP  420
GSNLQSSRLR SSLNARDIPA EDFNMLPDYD RQQLMNEFSG LSSNSLSRSG RMKSMNPSNL  480
DDLFSAESSS SPRFTDPAAL ASAVFSPTHK SAVFKQFQQQ NMLSPINTNF SPKNIDHSLL  540
QTSFAGGRMS PRNSVEPISP LSSRVSMLAQ LEKQQQQQHQ FRSLSSRELR TNSSAIVGSP  600
VNSPWSNLGS SNGKPDWTVS SEEFGKLRRS SSFELGNGDE PDLSWVQSLV KESPTDMKEK  660
ASSSSVQVPG PAAENKDDDD MNMAVEPMDR AVLGAWIEQL QLDQLVAQQN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554845.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554845.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A178VPY50.0A0A178VPY5_ARATH; OXS2
STRINGXP_010554845.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]