PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010554818.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 266aa MW: 30277.9 Da PI: 5.6529 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.5 | 5.6e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n r v fskRrng++KKA ELS+LCdaevavi+fsstgk+y++ss XP_010554818.1 9 KRIDNVNSRLVRFSKRRNGLMKKARELSILCDAEVAVIVFSSTGKVYDFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 57.8 | 4.6e-20 | 98 | 183 | 14 | 99 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +q++++ Lk+e+e L + ++ G +L+ Ls++eL +Le+qL+++l +i+++K+++ll+qie+++ +ek++ een++Lrk+le XP_010554818.1 98 IDASQEDSDSLKSELERLHLSYERMNGRELDGLSFQELLSLENQLNEALLNIKDRKTQVLLNQIERSRLQEKKALEENERLRKQLE 183 567899*****************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.165 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.1E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.94E-30 | 2 | 85 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.02E-37 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 5.9E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 13.859 | 98 | 188 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.5E-16 | 100 | 182 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 266 aa Download sequence Send to blast |
MGRGKTEIKR IDNVNSRLVR FSKRRNGLMK KARELSILCD AEVAVIVFSS TGKVYDFSSS 60 SMHQTLSRYG YSSVSSDHWE QPQLLQHQQP HPSLFQDIDA SQEDSDSLKS ELERLHLSYE 120 RMNGRELDGL SFQELLSLEN QLNEALLNIK DRKTQVLLNQ IERSRLQEKK ALEENERLRK 180 QLEMFEGSSE PLELTAVNTE LHILASFPLL GRGMEGKSSS LDDDNDSDDH HSDTTLQLGL 240 PSEYNRKKKI PKIEPACDSS GSQVCL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-17 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 1e-17 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 1e-17 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 1e-17 | 1 | 69 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010554818.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010554818.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL18 isoform X1 | ||||
Swissprot | Q9M2K8 | 4e-87 | AGL18_ARATH; Agamous-like MADS-box protein AGL18 | ||||
TrEMBL | A0A087GYM2 | 1e-93 | A0A087GYM2_ARAAL; Uncharacterized protein | ||||
STRING | XP_010554818.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6061 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57390.1 | 2e-68 | AGAMOUS-like 18 |