PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010554487.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | Trihelix | ||||||||
Protein Properties | Length: 329aa MW: 36230.2 Da PI: 10.3948 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 49.5 | 1.1e-15 | 33 | 116 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea++ ++ +r+klk+++We+v++++ +++ ++++qCk+k+e+++kry+ + + +++ s++p++ +l+ XP_010554487.1 33 EWSEGAVSSLLEAYEAKWVLRNRAKLKGQDWEDVARHVssraNQTKSPKTQTQCKNKIESMKKRYRSESAAAEG------SSWPLYPRLD 116 5*************************************9877778889999*****************999997......46****9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 9.6E-20 | 31 | 118 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MNGEANQEKP PLLLPAATAA AVSGAGDRLK RDEWSEGAVS SLLEAYEAKW VLRNRAKLKG 60 QDWEDVARHV SSRANQTKSP KTQTQCKNKI ESMKKRYRSE SAAAEGSSWP LYPRLDHLLR 120 GNAAVPPPPP PPPQQQPQVV QPLNSTAPLL LLEPSPSPSP ARAQPPPPQL PVPPETIQMS 180 NGSNGIGRIA KEDGVKPKFS EQSPETAMEM ETDSSTPAMY RDSSNNDNNN NAKMKPRKAK 240 SKKRPKEEKE IAGSIRWLGK VVMRSERARM ETMKEIEKMR AEAETKRGEI DLKRTEIIAN 300 TQLEIAKIFA VAASGHSKGI DSSLRIGRN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010554487.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010554487.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2 | ||||
TrEMBL | V4LMS5 | 1e-141 | V4LMS5_EUTSA; Uncharacterized protein | ||||
STRING | XP_010554487.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9859 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 1e-118 | sequence-specific DNA binding transcription factors |