PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554416.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WOX
Protein Properties Length: 274aa    MW: 31490.8 Da    PI: 8.7218
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554416.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox651e-2051110357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t+eq+ +Leel++  +r+p++e+++ +A+kl    +++ ++V++WFqN++a+e++
  XP_010554416.1  51 SRWNPTREQVMALEELYRGgTRTPTTEQIQVIASKLrefgRIEGKNVFYWFQNHKARERH 110
                     7*****************99**************************************95 PP
2Wus_type_Homeobox109.22.3e-3550112365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+Pt eQ++ Leely+ G+rtP++e+iq i+++L+e+G+ie+kNVfyWFQN+kaRer+k+
     XP_010554416.1  50 SSRWNPTREQVMALEELYRGGTRTPTTEQIQVIASKLREFGRIEGKNVFYWFQNHKARERHKR 112
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-1245111IPR009057Homeodomain-like
PROSITE profilePS5007111.30546111IPR001356Homeobox domain
SMARTSM003892.1E-448115IPR001356Homeobox domain
PfamPF000463.2E-1851110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.0E-851109IPR009057Homeodomain-like
CDDcd000861.60E-452112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0016049Biological Processcell growth
GO:0048314Biological Processembryo sac morphogenesis
GO:0048446Biological Processpetal morphogenesis
GO:0048482Biological Processplant ovule morphogenesis
GO:0051301Biological Processcell division
GO:0048353Cellular Componentprimary endosperm nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGYCCNDDLI KPLSIPINCT SQPLNQNHCS NTEERNNKEG DGKGTRKTGS SRWNPTREQV  60
MALEELYRGG TRTPTTEQIQ VIASKLREFG RIEGKNVFYW FQNHKARERH KRCRLEADVN  120
KNPNEHQHHL AADNKVLSGG HKVEQTKSCQ SSTASQDLVP VNNKQNSNRN GTTENSERRS  180
ESQKGSTWKI PMITSDTSHY NNHHVIFTSK FQEPDQLGSE EERREIRTLD LFPVNLTGNK  240
EKTDETKPEG CTGTRKPNGL RCNYYYYEFM PLRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554416.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554416.10.0PREDICTED: WUSCHEL-related homeobox 6 isoform X2
STRINGXP_010554415.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.11e-49WOX family protein