PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554357.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 259aa    MW: 29039.4 Da    PI: 7.9175
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554357.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.82.1e-322476254
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54
                    prl+WtpeLH++Fv+av+ LGG++kAtPk +l++m+vkgLt++hvkSHLQ+YR
  XP_010554357.1 24 PRLKWTPELHRCFVNAVDLLGGQHKATPKLVLRMMDVKGLTISHVKSHLQMYR 76
                    8**************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-292076IPR009057Homeodomain-like
PROSITE profilePS5129413.8772080IPR017930Myb domain
SuperFamilySSF466891.13E-142376IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-242476IPR006447Myb domain, plants
PfamPF002498.2E-92576IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MARCGKSTNV NGNGVRQYVR SPAPRLKWTP ELHRCFVNAV DLLGGQHKAT PKLVLRMMDV  60
KGLTISHVKS HLQMYRGPRL ASGKQEGNSS LRRRQDSGEE HDDMSVHTRK DRHLAPKPSL  120
SQHPTPRSRG RAEKRISVSA SEEDDNELRM NMTMPHSIIF HPHLLKVEGP ENEKNNWEST  180
WREDDDDDEE EECSDCELSL SLSLNHRLPS SRRSNGSSVS ETSEAVSSCS APFFKDCSAS  240
SSAQRRSLDL NLSISLLGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-182579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-182579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-182579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-182579357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554357.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554357.10.0PREDICTED: putative Myb family transcription factor At1g14600 isoform X3
SwissprotQ700D99e-52MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A078F8F81e-69A0A078F8F8_BRANA; BnaA02g26180D protein
TrEMBLA0A398AHD61e-69A0A398AHD6_BRACM; Uncharacterized protein
TrEMBLM4ECV81e-69M4ECV8_BRARP; Uncharacterized protein
STRINGXP_010554355.11e-166(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.12e-46G2-like family protein