PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010554329.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | ZF-HD | ||||||||
Protein Properties | Length: 174aa MW: 20329.1 Da PI: 9.2873 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 80.2 | 2.5e-25 | 3 | 51 | 3 | 56 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 + +Y eC++NhAa+lG++a+DGC+Ef ps a++ CaACgCHR++HRr XP_010554329.1 3 SPVYGECMRNHAARLGSYATDGCREFFPS-----AASGDICAACGCHRSYHRRL 51 568*************************9.....567899************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-13 | 3 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.6E-20 | 5 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 21.321 | 6 | 51 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-16 | 6 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-17 | 100 | 171 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.31E-7 | 107 | 170 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.0E-29 | 112 | 170 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MQSPVYGECM RNHAARLGSY ATDGCREFFP SAASGDICAA CGCHRSYHRR LHPPEIPASS 60 AGEIIPHHPR HPFTSLRRVK QLARLRREEP GPPLPPATET EEEEEEETVM MRRRRKSKFT 120 AEQREAMREY AERLGWTLRD KRSLRDEIKM FCDGIGVSRY LFKTWVNNNK RFYF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 117 | RRRKSK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00143 | DAP | Transfer from AT1G14687 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010554329.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010554329.1 | 1e-128 | PREDICTED: zinc-finger homeodomain protein 14 | ||||
Swissprot | Q9LQW3 | 2e-66 | ZHD14_ARATH; Zinc-finger homeodomain protein 14 | ||||
TrEMBL | D7KCI5 | 1e-68 | D7KCI5_ARALL; ATHB32 | ||||
STRING | XP_010554329.1 | 1e-127 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13728 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14687.1 | 2e-63 | homeobox protein 32 |