PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G14687.1 | ||||||||
Common Name | AtHB32, F10B6.7, HB32, ZHD14 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 168aa MW: 19922.6 Da PI: 9.4391 | ||||||||
Description | homeobox protein 32 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 77.7 | 1.5e-24 | 3 | 52 | 2 | 57 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++++Y+eC++NhAa+lG++a+DGC+E+ + +++ C ACgCHR++HRr AT1G14687.1 3 STCVYRECMRNHAAKLGSYAIDGCREYSQP------STGDLCVACGCHRSYHRRID 52 6899***********************998......56789*************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-22 | 4 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.1E-17 | 5 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.6E-16 | 7 | 50 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 17.701 | 7 | 51 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-16 | 92 | 165 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.25E-7 | 98 | 164 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.0E-31 | 106 | 165 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000014 | anatomy | rosette leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MQSTCVYREC MRNHAAKLGS YAIDGCREYS QPSTGDLCVA CGCHRSYHRR IDVISSPQIN 60 HTRFPFTSLR RVKQLARLKW KTAEERNEEE EDDTEETSTE EKMTVQRRRK SKFTAEQREA 120 MKDYAAKLGW TLKDKRALRE EIRVFCEGIG VTRYHFKTWV NNNKKFYH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 110 | QRRRKS |
2 | 106 | 111 | RRRKSK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 42562065 | 0.0 | ||||
Genevisible | 262843_at | 0.0 | ||||
Expression Atlas | AT1G14687 | - | ||||
AtGenExpress | AT1G14687 | - | ||||
ATTED-II | AT1G14687 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and stems. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00143 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G14687.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q9LQW3 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G14687 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006917 | 0.0 | AC006917.6 Genomic sequence for Arabidopsis thaliana BAC F10B6 from chromosome I, complete sequence. | |||
GenBank | AY086523 | 0.0 | AY086523.1 Arabidopsis thaliana clone 25577 mRNA, complete sequence. | |||
GenBank | BT003942 | 0.0 | BT003942.1 Arabidopsis thaliana clone RAFL15-16-E16 (R20740) unknown protein (At1g14687) mRNA, complete cds. | |||
GenBank | BT005027 | 0.0 | BT005027.1 Arabidopsis thaliana clone U20740 unknown protein (At1g14687) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_563956.1 | 1e-125 | homeobox protein 32 | ||||
Swissprot | Q9LQW3 | 1e-126 | ZHD14_ARATH; Zinc-finger homeodomain protein 14 | ||||
TrEMBL | A0A178W745 | 1e-123 | A0A178W745_ARATH; ZHD14 | ||||
STRING | AT1G14687.1 | 1e-124 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13728 | 21 | 24 | Representative plant | OGRP91 | 16 | 237 |
Link Out ? help Back to Top | |
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Phytozome | AT1G14687.1 |
Entrez Gene | 838033 |
iHOP | AT1G14687 |
wikigenes | AT1G14687 |