PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010554223.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 430aa    MW: 49247 Da    PI: 6.8407
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010554223.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.52.7e-26118199286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e+++Li++rrem+  ++++k++k+lWe++s+k+re+gf rsp +C++kw+nl k++kk ++++++     s +++y++++e
  XP_010554223.1 118 WVQDETRCLIALRREMDGLFNTSKSNKHLWEQISAKIREKGFDRSPMMCTDKWRNLLKEFKKARHQDRGS---GSAKMSYYKEIE 199
                     *******************************************************************984...556899***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-4109178IPR009057Homeodomain-like
PROSITE profilePS500908.327110174IPR017877Myb-like domain
SMARTSM007174.2E-5114176IPR001005SANT/Myb domain
CDDcd122035.96E-27116181No hitNo description
PfamPF138377.0E-20117201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MSSRVDSTLL FSQSSSHLSD ECRNSGFLSR TKPGPETSMF VSDKPRPIVF YKNDINSSTA  60
ARDMIIEVPA DGDLPPHQHN SHHHNQLHQA QQQQQMILGD SSGEDHEMKA PKKRAETWVQ  120
DETRCLIALR REMDGLFNTS KSNKHLWEQI SAKIREKGFD RSPMMCTDKW RNLLKEFKKA  180
RHQDRGSGSA KMSYYKEIEE ILRERSKKAA QYKSPPPSKV DSFMQFADKG FDDTSLSFGS  240
VEAASVRPAL NLERRLDHDG HPLTIATADA VAPSGVPPWN WRETPGNAGG DGHSFGGRVI  300
TVKFGDYTRR IGIDGTAEAI KEAIRSAFRL RTRRAFWLED EEQIVRSLDR DMPQGSYTLH  360
VDEGLAIKVY HYDESDQLPV HTEEKMFYTE EDYREFLERR GWTCLREFDG FRNIDNMDDL  420
QPGALYRGIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A1e-48112197186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00666PBMTransfer from GSVIVG01007522001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010554223.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010554223.10.0PREDICTED: trihelix transcription factor GT-1-like isoform X1
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A067JSB40.0A0A067JSB4_JATCU; Uncharacterized protein
STRINGXP_010554223.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]