PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01007522001
Common NameLOC100265024, VIT_17s0000g10420
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Trihelix
Protein Properties Length: 343aa    MW: 40060 Da    PI: 6.2021
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01007522001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.77.2e-2467145286
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        W ++e++ Li++rre++e ++++k++k+lWe+++++m+e g+ r++ +C++kw+nl k+ykk ++++++  s++     y+++le
  GSVIVT01007522001  67 WVHDETHSLIAFRRELDEFFNTSKSNKHLWEQIAARMSELGYDRTAAMCTDKWRNLLKDYKKAQQRDGG--SGKM----YYEELE 145
                        ****************************************************************99987..3333....676665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.26959123IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.0E-560129IPR009057Homeodomain-like
CDDcd122034.52E-2665129No hitNo description
PfamPF138372.7E-1966146No hitNo description
SuperFamilySSF466894.4E-566125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MPRPMSFFVE EDEDMLMDAD GNNVEHVPQH DPHRHHPQRQ HLQQILLTES SGEDIEIKVP  60
RRRAETWVHD ETHSLIAFRR ELDEFFNTSK SNKHLWEQIA ARMSELGYDR TAAMCTDKWR  120
NLLKDYKKAQ QRDGGSGKMY YEELEEFYAE KKRNDPYRKI TSSRAPFMHI SEKDGRKARF  180
NSEKVMDYDQ HSLGISEAEV VAANGLPPWN RKETPGSGTE NESAYTGRVI WVNYGECTKR  240
IGIDGSSDSI KEAIRSSFGL RTNRAFWLED ENEIVRSLDR DMPLTTYTLC LDAGLTIKIC  300
LYDQPCQLLP VRTEEKTFYC EDDLRDFLHH RGWMGLRRFK LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A3e-3261143186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00666PBM25215497Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4440760.0AM444076.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X003790.9, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010663030.10.0PREDICTED: trihelix transcription factor GT-1
SwissprotQ9FX531e-107TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLD7SH980.0D7SH98_VITVI; Uncharacterized protein
STRINGVIT_17s0000g10420.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP59331318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-106Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]