PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010554012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 236aa MW: 27129.2 Da PI: 5.0554 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.7 | 1e-18 | 65 | 117 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t+eq++ Le+ F++++++ ++ +LAk+lgL+ rqV vWFqNrRa+ k XP_010554012.1 65 KHRLTAEQVNLLEKNFQEENKLEPLRKSQLAKNLGLPPRQVAVWFQNRRARSK 117 5679***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 113.4 | 1.4e-36 | 63 | 153 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 e+k+rl++eqv+lLE++F+ee+kLep rK++la++Lgl prqvavWFqnrRAR k kq+Ek+y+ Lk+ yd+l+e++e + + +e+L++e+ XP_010554012.1 63 ERKHRLTAEQVNLLEKNFQEENKLEPLRKSQLAKNLGLPPRQVAVWFQNRRARSKVKQIEKQYDLLKSLYDSLREKHELVLEANEKLKAEV 153 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.13E-18 | 54 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.038 | 59 | 119 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-15 | 63 | 123 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.95E-15 | 64 | 120 | No hit | No description |
Pfam | PF00046 | 5.1E-16 | 65 | 117 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-19 | 65 | 126 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.5E-6 | 90 | 99 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 94 | 117 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.5E-6 | 99 | 115 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.0E-10 | 119 | 161 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDSGWLSVDR SGSRVNLHSP ENLSLILPGY STVMDMDESS KRGFSTISGH SFNRKYCDHS 60 AYERKHRLTA EQVNLLEKNF QEENKLEPLR KSQLAKNLGL PPRQVAVWFQ NRRARSKVKQ 120 IEKQYDLLKS LYDSLREKHE LVLEANEKLK AEVLTLTEKL QASGIDSQPT NNQNARSFPN 180 DPEEKPDETM SSSAALNPAA DDEDNFSDVF MAAEQQTNDE PFDWWVWQSI SQPLWI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 119 | RRARSKVKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010554012.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010554012.1 | 1e-175 | PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1 | ||||
Swissprot | Q02283 | 2e-38 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
STRING | XP_010554012.1 | 1e-175 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16382 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 9e-41 | homeobox 1 |
Publications ? help Back to Top | |||
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